Lysobacter capsici: LC55x_4994
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Entry
LC55x_4994 CDS
T04162
Name
(GenBank) IPT/TIG domain protein
KO
K20276
large repetitive protein
Organism
lcp
Lysobacter capsici
Pathway
lcp02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
lcp00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
LC55x_4994
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TIG
RHS_repeat
Motif
Other DBs
NCBI-ProteinID:
ALN88241
LinkDB
All DBs
Position
complement(5528706..5534525)
Genome browser
AA seq
1939 aa
AA seq
DB search
MGRRLFSASPAGRARSLSRSLRTALPAALLLSAFAAVATTYVYDSNGRLVVATNDAGESA
RYVYDAMGNLKRVDRLLATDLAVFGFSPGRGATGQSVRIQGRGFSATSAQNAVAFNGTSA
SVIAASATELTALVPVGATTGPITVTVGGRSADSVGDFVVDPSAQAPVIDSFSPAVGKIG
DAVAVVGRRLQPVAGQTTLRLNGRPVAAQTVTDTAVSFVIPSGAGSGKIELGTPYGVARS
GQSLLVLPAGIAAASVVDSKDAVVDGAGINYSIATAGEQTAALIRGERGDYLSAQFSNLG
SLRIQYWLYGVDNAVLGNGTVSPETPTYHLPKLPAAGTYLLIMRAQSAPASWTLAIEKAK
PLAIDGVASAIDTATAGQQKRLTFEPAAGVPLGLGLADRAVPTNWGNASVYVYDANSAQV
GHQYCEQAKSGCALNLSGLGAGTHTLVVIPASSGTRMLGFDASLSTDQVHALGRDTAITL
AIARRGQNARLSFAGAAGEVLALQVAGQVTVPASRNVYFRVTGPDGTTVASSGAIAGATL
NLSLPAAGNYQVLVDPEFGETAQARIMLATGTVAGLQIDGNSTTHATTLPGEGVYLSFDA
GAGQHLGLGISDLTVSSGAYVDVTAYKPDGSVLALGNCHADNNGCDLNLPNLTAGRYAIA
ITPSDAGQTMQFQATLSSDASVALPRNAATAMALPRRGQNGRMGFSGVLGEIIAVQVASQ
STTPLDRSVYYRIYKPDGSVLASMGVLSGKTINLELPATGNYQLYVDPEYGATSSAQVTL
TTGVLGEMELDAGTGRYETTQAGTSVTLTINASAGQNLGLGLSDLVVNTGSYVDVYVYKP
GGDWLTDINCEVAQGGCGINLVNTLAGTYTVSVRPSSSGQTMKFKATLSSDAVMTFSRNT
PLTFALERRGQNARLSFAGTAGEVLGMLVAGQSTFPEGKQVRYTVYKPDGYELTNGIAIT
GVTFNLRLPVNGTYRVFVDPEYGAMPTARLTLSTGTTSGMELDGASANQQTSLPGQGIYL
TADASNSGLGLGISDLAVSSGNGVKIYVNKPDGSWHADFTCEVSAGGCAVNLPKFAGRYG
IAISPIGAQQTMSLRTTLSSDKRETLSRDSVMPLTIGRRGQNARLSFTGAAGEILGLAVA
GQATFPDAREVRYAIIKPDGYELESGIAVTGVTYSMRLPSDGTYEVFVDPSGGATATSQV
TLSTGTTNGLATDGGSVQYETILPGQGLFFAADATNASLGFGISDLVVSSGSGVKVYAYK
PDNSWHADFFCEVETQGCSLNLPKATGRYAIYVVPTGLDQAISFKATLSSDQLQTLTRDT
PLALNVTRRGQNARLSFTGSAGETIGLQVAGQSTFPAGKEVAYAIIKPDGYELERGTAIT
GVTYTKRLPSNGSYYVFVDPQHAATVASQVTLSTGTASGLVVGGPSILSETSLPGQGVYF
TADASASALGLGISELAVSSGAGVKLYVEKPDGSWHTDFTCEVATDGCDVNLPKAAGRYG
IAISPVGAQQTMSFKATLSADVAATLTRDSAYTLSLTRRGQNGRLSFTGSAGETIGLMVA
GQSTLPADREVAYVIIKPDGYELERGNAITGITYGKRLPSNGTYQVFVDPQHGVTASSQV
TLSTGTATGLSIDGASVLNQTTLPGQGVFFTADATAAALGFGISELALSSGNGVKVYASK
PDGSWHGDFTCEVSAGGCGLNLPKFAGRYGIAISPIGAQQTMSFKATLSTDQTGTLTRDS
AHALSIARRGQNGRLSFAGTANEHLALLVADQGTAPSGRNVTYSVIRPNGTELDSGIAAT
GVFVDLALNATGTYQVFVDGENAAAVSSQVTLSSGAGLSNNGGDVSFQTTLPGQRVHLVA
DASATALSFVLSDLQPSVGSSVKIYAYKPDGSWHADFTCNAPAGCSLALPQRSGRYSVYV
SPASNTQTMTFKAKLTSGP
NT seq
5820 nt
NT seq
+upstream
nt +downstream
nt
gtgggccgtcgtcttttttcagcgtcgcccgccgggcgtgcgcgatcccttagccgctcg
ctgcgcaccgcgctgcccgcggccttgttgctgtcggccttcgccgccgtcgccaccacc
tacgtctacgactccaacggccgcctggtcgtcgcgaccaacgatgccggcgaaagcgcg
cgttacgtctacgacgccatgggcaatctcaagcgcgtggatcgtctgctcgccaccgat
ctggcggtgttcggcttttcgcccgggcgtggcgccaccggtcagtcggtacgcatccag
ggccgcggattcagcgcgacgtcggcgcagaatgcggtcgcgttcaatggcacgtccgcc
agtgtgatcgcggccagcgcaacagaactcaccgcgctggtcccggtcggcgcgaccacc
ggaccgatcaccgttaccgtcggcggtcgcagcgccgacagcgtcggcgatttcgtcgtc
gaccccagcgcgcaggcgccggtcatcgattcgttctcgcccgcggtgggcaagatcggc
gacgccgtggccgtcgtcggccgacgtctgcaaccggtcgcgggacagaccacattgcgt
ctcaacggtcgaccggtcgcggcgcagaccgtaaccgacaccgcggtgagcttcgtcatt
cccagcggtgccggcagtggcaagatcgagctgggcacgccttacggcgtggcccggagc
gggcaaagcctgctggtcctgcccgccggcatcgccgccgcctcggtggtcgacagcaag
gacgccgtggtcgatggcgccggcatcaattattcgatcgcgaccgccggcgaacagacc
gccgcgctgatccgtggcgagcgcggcgactacctcagcgcgcagttctctaatctcggc
agcctgcgcatccagtactggttgtacggcgtcgacaatgcggtactcggcaacggcacg
gtgtcgccggaaaccccgacctaccatctgcccaagctgcccgctgccggcacttatctg
ctcatcatgcgggcgcaatcggcgccggcaagttggacgctggcgatcgaaaaagccaag
ccgctcgcgatcgacggcgtcgcttccgcgatcgacaccgccaccgccggccagcagaag
cggctgaccttcgagccggccgcgggcgtgccgttgggcctgggcctcgccgatcgcgcg
gtgcccaccaactggggcaacgcctcggtgtacgtgtacgacgccaacagcgcgcaggtg
ggacatcagtactgcgagcaagccaagagcggctgcgcgctgaacctgagcggcctgggc
gcgggcacgcacacgctggtggtgattccggccagcagcggcacgcgcatgctcggcttc
gatgcgagcctgtccaccgaccaggtccacgcgttgggtcgcgataccgccatcaccctg
gcgatcgcgcgacgcggccagaacgcgcgcctgtctttcgctggcgcggccggcgaggtg
ctcgcgctgcaggtcgccggccaggtcaccgtgccggcatcgcgaaacgtgtatttccgc
gtgaccggtccggacggcacgaccgtggcgtcctctggtgccatcgcgggcgccacgctg
aacctgtcgctgccggccgccggcaattaccaggtattggtagatcccgagttcggcgaa
accgcgcaggcccggatcatgctggccacgggcaccgtcgcggggctgcagatcgacggc
aacagcaccacccatgccacgaccttgccaggcgagggcgtctacctcagcttcgatgcc
ggcgccggacagcatctgggcctgggcatttccgacctgaccgtgtctagcggcgcctat
gtcgacgtcaccgcctacaagcccgacggcagcgtgctggccctcggcaattgccatgcc
gacaacaacggctgcgacctgaacctgccgaacctcacggccgggcgctacgcgatcgcg
atcacgccaagcgacgccggccagaccatgcagttccaggccacgctttcctccgatgca
tcggtcgccctgccgcgcaatgccgcgacggcgatggccttgccgcgaagaggccagaac
ggccgcatgggcttcagcggcgtgctcggcgagatcatcgccgtgcaggtcgccagccag
tccaccacgccgctcgatcgcagcgtttactaccgcatctacaaacccgatggcagcgtg
ctggcgtcgatgggcgtgctcagcggcaagacaatcaacctggaattgccggcgaccggc
aactaccagctctatgtcgatcccgaatacggcgctacctcaagcgcgcaggtcactctg
accaccggcgtacttggcgagatggaactcgacgccggtaccggccgctatgagaccacc
caggccggcaccagcgtgaccttgactatcaacgccagcgccggccagaacctcgggctg
gggttgagcgacctggtggtgaacaccggcagctatgtcgatgtgtatgtgtacaagccc
ggtggggactggctgaccgacattaactgcgaggtcgcgcagggcggctgcggaatcaat
ctggtcaatacgctcgcgggcacctacaccgtatcggtacggccatcgagcagcggccag
accatgaagttcaaggccaccttgtccagcgacgcggtgatgaccttttcgcgcaacacg
ccgctcacgttcgcgctggaacgccgcggccagaacgcgcggctgtcgttcgcgggcacg
gcgggcgaagtcctgggcatgctggtcgccgggcaatcgaccttcccggagggcaaacag
gtcagatacaccgtctacaaacccgatggctacgagctgacaaatggcatcgccatcacc
ggggtgaccttcaacctgcgcttgccggtcaacggaacctaccgggtattcgtcgatccc
gaatacggggcgatgcccaccgcgcgcctgaccctgtcgaccggcaccaccagcggcatg
gaactcgacggcgccagcgcgaatcagcagacctcgttgcccggacagggcatctatctg
accgcggacgccagcaactccgggttgggtctgggcatcagcgaccttgccgtgagcagc
ggcaacggcgtcaagatatacgtcaacaagcccgatggttcgtggcatgccgatttcact
tgcgaggtgagcgccggcggctgcgccgtcaacctgcccaagttcgcggggcgctacggc
atcgccatcagtccgatcggcgcgcagcagacgatgagccttcgcacgacgttgtcgagc
gacaagcgcgaaaccctcagtcgcgattcggtgatgccgttgaccatcggccgacgcggc
cagaacgcgcgcttgagcttcaccggcgccgccggcgaaatattgggcctggccgtggcc
gggcaggcgacattcccggacgccagggaggtccgctacgccatcatcaagcccgatggc
tacgagctcgaaagcggcatcgcggtgaccggcgtgacctacagcatgcgtctgccgagc
gacggcacctacgaggtgttcgtcgatccgagcggtggcgcgaccgcgacctcgcaagtc
accttgtccactggcaccaccaatggcctggcgaccgacggcggcagcgttcagtacgag
accatcctgcccgggcagggcctgttcttcgctgctgatgcgaccaatgcgtcgctgggc
ttcggcatcagcgacctggtggtcagcagcggctccggagtcaaggtttacgcctataag
cccgacaattcctggcatgccgatttcttctgcgaggtcgaaacccagggctgcagcctc
aacctgcccaaggccacgggacgctatgccatctacgtggtgccgaccggcctggaccag
gcgataagcttcaaggcgacgttgtcgtccgatcaactgcaaacgctgacccgcgacacg
ccgctggccttgaacgtgacccgacgcggccagaacgcgcgcctgtcgttcaccggcagc
gccggcgaaaccataggcctgcaggtcgcggggcagtcaacgttcccagccggcaaggaa
gtggcctacgcgatcatcaagcccgacggctacgagctcgaacgcggcacggcgatcacc
ggtgtgacctacaccaagcgattgccgagcaacggttcgtattacgtattcgtcgatccg
caacacgccgcgacggtggccagtcaggtgaccttgtcgaccggcacggcatcgggactg
gtcgtgggcgggcccagcatcctcagcgaaaccagcctgcccggccagggcgtgtacttc
accgccgatgcgtccgcctcggcgctcggcctgggcatcagcgagctagccgtcagcagc
ggcgccggcgtcaagctctacgtggaaaagcccgacggttcgtggcataccgatttcacc
tgcgaagtcgcgaccgacggctgcgacgtcaacctgccgaaggccgccggtcgctacggc
atcgcgatcagtccggtcggcgcgcagcagacgatgagcttcaaggccaccttgtcggcc
gatgtcgccgctacgctgacccgcgactcggcttataccttgagcctgacccgtcgcggc
cagaatgggcggctgtcgttcaccggcagcgccggcgagaccatcggcctgatggtcgcc
gggcaatcgaccttgcccgccgatcgggaagtcgcttacgtgatcatcaagcccgacggc
tacgagctggagcgaggcaatgcgatcaccggcataacctacggcaagcgcctgcccagc
aacggcacctaccaggtattcgtcgatccgcagcacggcgtgaccgccagcagccaggtg
accctgtcgaccggcacggcgacgggcctgagcatcgacggcgccagcgtgctcaatcag
accacgctgcccggccaaggcgtgttcttcaccgccgacgccacggccgccgcgctcgga
ttcggcatcagcgagctggccttgagcagcggcaacggcgtcaaggtgtatgcgagcaaa
cccgatggttcatggcatggcgatttcacttgcgaggtgagcgcgggcggatgcggtctt
aatctgcccaaattcgcgggacgttacggcatcgccatcagtccgatcggggcgcagcag
acgatgagcttcaaggccaccttgtcgaccgatcagaccggcacgctgacgcgcgattcg
gcgcatgccttgagcatcgcccggcgcggccagaacggccggctcagcttcgccggcacc
gccaacgaacacctggcgctgctggtcgccgaccagggcaccgcgcccagcggcaggaac
gttacctactcggtgatccggcccaacggcaccgaactcgactcgggcatcgcggcgacc
ggcgtcttcgtcgatcttgcgctcaatgccactggcacctaccaggtgttcgtcgacggc
gaaaacgccgctgccgtgtcgagccaggtcaccttgtccagcggcgccggcctcagcaac
aacggcggcgatgtcagcttccagaccacgctgccgggccagcgcgtgcatctggtcgcc
gacgcatcggcgacggcgttgagtttcgtactcagcgatctgcaacccagcgtgggcagc
agcgtgaaaatctatgcgtacaaacccgatggctcctggcatgccgacttcacctgcaac
gcgccggctggttgcagtctggccctgccgcagcgcagcgggcgctacagcgtgtacgtg
tctccggccagcaacacccagaccatgacgttcaaggccaagttgacgtcgggtccgtga
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