Lysobacter capsici: LC55x_5047
Help
Entry
LC55x_5047 CDS
T04162
Symbol
polA
Name
(GenBank) DNA polymerase I, 3' --5' polymerase, 5' --3' and 3' --5' exonuclease
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
lcp
Lysobacter capsici
Pathway
lcp03030
DNA replication
lcp03410
Base excision repair
lcp03420
Nucleotide excision repair
lcp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lcp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LC55x_5047 (polA)
03410 Base excision repair
LC55x_5047 (polA)
03420 Nucleotide excision repair
LC55x_5047 (polA)
03440 Homologous recombination
LC55x_5047 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lcp03032
]
LC55x_5047 (polA)
03400 DNA repair and recombination proteins [BR:
lcp03400
]
LC55x_5047 (polA)
Enzymes [BR:
lcp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LC55x_5047 (polA)
DNA replication proteins [BR:
lcp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LC55x_5047 (polA)
DNA repair and recombination proteins [BR:
lcp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
LC55x_5047 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LC55x_5047 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
ALN88294
LinkDB
All DBs
Position
complement(5606312..5609083)
Genome browser
AA seq
923 aa
AA seq
DB search
MKRLVLIDGSSYLYRAFHALPPLTNDAGEPTGALFGVVNMLRSTLAERPDYVAFVVDAPG
KTFRDDLDPQYKANRPPMPDDLRAQVLPMCEIVEALGIPILRIDGVEADDVIGTLALRAA
GDAIDVTISTGDKDFAQLVRPGVVLVNTMSGSRMDSDEAVIAKFGVRPNQIVDLLSLMGD
SVDNVPGVEKCGPKTAAKWLAEYDTLEGVIAHADQIKGKIGENLRAVLGRLPLNRQLTTI
KTDVELDRGPQQLALRERDTEALRALYARYGFKQALREIEGAAATTANEIAADRAGLRAT
AAGHARSNAAGETPDAALSAKGEYEAIVTQPQLDALVAALQSSEEFAFDSETDSLDPMMA
NLVGLSFATEPGRAVYIPLAHDYPGVPAQLDRQAVLDALRPVFADPARRKLGQHGKYDLH
VLRRHGVDVLGYADDTMLESFVYNATGSRHDMDSLAKRYLGYDTIKYADVAGKGAKQILF
SQVALDDATKYAAEDADVTLRLHRVLGARLAAEPELEKVYREIEMPLVPVLERIEANGVM
IDGDELRRQSQDLGKRMLAAQIKATELAGRTFNLDSPKQLQALLFDELKLPVLVKTPTGQ
PSTNEEALEAIADQHELPRVILEYRGLAKLRSTYTDKLSEMVNPHTGRVHTSYHQAGAAT
GRLASSDPNLQNIPIRTDDGRRIRRAFVAPEGRRLVACDYSQIELRIMAHLSEDPGLVRA
FESGADVHRATAAEVFGKKSLEEVSANERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQ
DYIALYFSRYPGVRDFMERTRQDARDKGYVETVFGRRLYLENIKASNQGLRAGAERAAIN
APMQGTAADIIKRAMIDIDGWLSQHADRAKMILQVHDELVFEVESAFADTLIAQATQRMA
TAATLRVPLVVDTGIGINWDEAH
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagactcgtcctgatcgatggttccagctacctctaccgcgccttccatgcgctg
ccgccgttgaccaacgatgccggcgagccgaccggcgcgctgttcggcgtggtcaacatg
ctgcgctcgaccctggccgaacgccccgactacgtggccttcgtggtcgacgcgcccggc
aagaccttccgcgacgacctggacccgcagtacaaggccaatcgcccgccgatgcccgac
gacctgcgcgcccaggtgctgccgatgtgcgagatcgtcgaggccctgggcatcccgatc
ctgcgcatcgacggggtcgaggccgacgatgtgatcggcaccctcgcgctgcgcgcggcc
ggcgatgcgatcgacgtcaccatttccaccggcgacaaggatttcgcccagttggtgcgg
cccggcgtggtgctggtcaacaccatgagcggcagccgcatggattccgacgaggcggtg
atcgccaaattcggcgtgcgcccgaaccagatcgtcgacctgctctcgctgatgggcgac
agcgtcgacaacgtgcccggcgtggagaaatgcgggccgaagaccgcggccaaatggctg
gccgagtacgacaccctggaaggcgtgatcgcacatgccgatcagatcaagggcaagatc
ggcgagaacctgcgcgcggtgctgggccggttgccgctcaatcgccagctgaccacgatc
aagaccgacgtcgaactcgaccgcggcccgcagcagctcgccctgcgcgagcgcgacacc
gaggcgctgcgcgcgctgtacgcgcggtacggcttcaagcaggcgctgcgcgagatcgaa
ggcgcggcggccaccaccgccaacgagatcgccgccgaccgcgccggcctgcgcgccacc
gcggccggccacgcgcgttccaacgcggccggcgaaacgcccgacgccgcgctgtcggcg
aagggcgagtacgaggcgatcgtgacccagccgcagctcgacgcgctggtcgcggcgctg
cagtcgagcgaggaattcgccttcgacagcgaaaccgattcgctcgacccgatgatggcc
aacttggtcggattgagtttcgccaccgagcccggccgcgcggtgtatatcccgctggcc
cacgattatcccggcgtgccggcgcagctcgatcgccaggccgtgctcgatgcattgcgc
ccggtattcgccgatccggcgcggcgcaagctcggccagcatggcaagtacgacctgcat
gtcctgcgccggcatggcgtggacgtgctcggttacgccgacgacaccatgctcgagagc
ttcgtctacaacgccaccggcagccgtcacgacatggattcgctggccaagcgttacctg
ggctacgacacgatcaagtacgccgatgtcgccggcaagggcgccaagcagatcctgttc
tcgcaggtcgccctcgacgatgccaccaagtacgccgccgaagacgccgacgtgaccttg
cgcctgcaccgcgtgctcggcgcgcgtctggccgccgagccggagctggaaaaggtttac
cgcgagatcgaaatgccgctggtgccggtgctcgaacgcatcgaggccaacggcgtgatg
atcgacggcgacgaactgcgccggcaatcgcaagacctgggcaagcgcatgctcgccgcg
cagatcaaggccaccgaactggccgggcgcaccttcaacctggattcgcccaagcagttg
caggccttgttgttcgacgaactcaagctgccggtgctggtgaagacgccgaccggccag
ccgagcaccaacgaggaagcgctcgaagcgatcgccgatcagcacgaactgccgcgggtg
attttggaataccgcggtttggcgaaactgcgcagcacctataccgacaaactgtcggag
atggtcaatccgcacaccggccgcgtccacaccagttatcaccaggccggcgctgcgacc
ggacgcttggcgtcgagcgatccgaacctgcagaacattccgatccgcaccgacgacggc
cgccgcatccgccgcgccttcgtcgcgccggaaggccggcgtctggtcgcctgcgattac
tcgcagatcgaactgcggatcatggcccacctgtcggaagatccgggcctggtgcgcgcg
ttcgaatccggcgccgacgtgcatcgcgcgaccgcggccgaagtgttcggcaagaagtcg
ctcgaagaggtcagcgcgaacgaacgacgcgcggccaaggcgatcaacttcggtctgatg
tacggcatgagcgcgttcggtctggcgcgtcagctcggcatcggccgcggcgaggcgcag
gactacatcgccctgtatttcagccgttatccgggcgtgcgcgatttcatggagcgcacc
cgtcaggacgcgcgcgacaagggttatgtcgaaaccgtgttcggccgtcgcctgtatctg
gagaacatcaaggcgtcgaaccagggcctgcgcgcgggcgccgaacgcgctgcgatcaac
gcgccgatgcagggcaccgcggccgacatcatcaagcgcgcgatgatcgacatcgacggc
tggctgtcacagcacgccgaccgtgccaagatgatcctgcaggtgcacgacgaactggtg
ttcgaggtcgagagcgcattcgccgataccttgatcgcccaggccacacagcggatggcg
accgcagccacacttcgcgttcccctggttgttgacaccggtatcggtattaactgggac
gaagcgcattaa
DBGET
integrated database retrieval system
