Lysobacter capsici: LC55x_5055
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Entry
LC55x_5055 CDS
T04162
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
lcp
Lysobacter capsici
Pathway
lcp03420
Nucleotide excision repair
lcp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lcp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LC55x_5055 (uvrD)
03430 Mismatch repair
LC55x_5055 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcp03400
]
LC55x_5055 (uvrD)
Enzymes [BR:
lcp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LC55x_5055 (uvrD)
DNA repair and recombination proteins [BR:
lcp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LC55x_5055 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
LC55x_5055 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Viral_helicase1
AAA_22
DUF3553
Motif
Other DBs
NCBI-ProteinID:
ALN88302
LinkDB
All DBs
Position
complement(5618222..5620414)
Genome browser
AA seq
730 aa
AA seq
DB search
MDVSHLLDALNPAQREAVSAPAGHYLVLAGAGSGKTRVLTHRIAWLNEVFGVPNHGILAV
TFTNKAAGEMRARVDAQLPRGARGMWIGTFHGLAHRLLRLHWQEAKLPEGFQVLDSDDQL
RLVKRVVQALELDETRFPPRQIAWWINAQKDEGRRPRNIQPANDDWADVMLRCYEAYQER
CERAGLVDFAELLLRAHELLRDNPALLTHYRTRFREILVDEFQDTNAIQYAFVRVLAGDS
GHVFVVGDDDQAIYGWRGAKVENVQKFLRDFPGAQTIRLEQNYRSSANILDAANAVIAHN
PDRLGKKLWTDTGHGEPIDLYAAYNEMDEARFVIERLRQWVRDGGSYGDVAILYRSNAQS
RAYEEALLSEQVPYRVYGGQRFFERAEIKDTLAYLRLLTNRADDAAFERAVNTPTRGIGD
RTLDEVRKRARAEAVSLWDAVRLVAAENVLAARARNALAGFMALIEALESDVVDMPLPEK
IDHVLQRSGLRDHYANESRGQLDSRTDNLDELVSVASRFSRSDEDEAAAMPELIAFLSYA
ALEAGEGQAQAGEDGVQLMTLHSAKGLEFPLVFLGGLEEGLFPSSRSTEESGRLEEERRL
AYVGITRAREKLVLSYAETRRIHGMETYGSPSRFLREIPSQLLHEVRPKVQVSRPMYNNS
GRRDGGGLNRGHAAIEAPPVKLGAQVRHASFGTGTVTDYEGSGAHARVQVNFDDVGSKWL
VLAYANLVPA
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atggacgtatcgcacttgctcgacgcactcaatccggcccagcgcgaagccgtttcggcg
cccgccggccattatctggtcctcgcgggcgccggcagcggcaagacccgcgtgctgacc
caccgcatcgcctggctcaacgaagtcttcggcgtgcccaaccacggcatcctcgcggtg
acgtttaccaacaaggcggccggcgagatgcgcgcgcgcgtcgacgcgcagctgccgcgc
ggcgcgcgcggcatgtggatcggcaccttccacggcctggcccatcgcctgctgcgcctg
cactggcaggaggccaagctgcccgaaggcttccaggtgctcgacagcgacgatcagctg
cgcctggtcaagcgcgtggtgcaggcgctggagctggacgaaacccgcttcccgccgcgc
cagatcgcctggtggatcaacgcgcagaaggacgagggccggcgcccgcgcaacatccag
ccggccaacgacgactgggccgacgtgatgctgcgctgttacgaggcctatcaggagcgc
tgcgagcgcgccggtctggtcgatttcgccgagttgctgctgcgcgcgcatgaactgctg
cgcgacaacccggccttgctcactcactaccggacccgtttccgcgagatcctggtcgac
gaattccaggacaccaacgcgatccagtacgcgttcgtgcgcgtgctggccggcgacagc
ggccatgtgttcgtggtcggcgacgacgatcaggcgatctacggctggcgcggcgccaag
gtcgagaacgtgcagaaattcctgcgcgatttccccggcgcgcagaccatccgcctggag
cagaactaccgctccagcgccaacatcctcgacgccgccaacgcggtcatcgcccacaac
cccgaccgcctgggcaagaaactgtggaccgacaccggccacggcgagccgatcgatctg
tacgcggcctacaacgagatggacgaggcgcggttcgtgatcgagcgcctgcgccagtgg
gtgcgcgacggcggcagctacggcgacgtggcgatcctctaccgcagcaacgcgcaatcg
cgcgcctacgaagaagccttgttgtccgaacaggtgccgtaccgcgtgtacggcggccag
cgcttcttcgagcgcgccgaaatcaaggacacgctggcctatctgcgcctgctgaccaac
cgcgccgacgacgccgcgttcgaacgcgcggtcaacaccccgacccgcggcatcggcgac
cgtaccctggacgaagtgcgcaaacgcgcgcgcgccgaggcggtgtcgctgtgggacgcg
gtgcggctggtggcggccgagaacgtactcgccgcgcgcgcgcgcaatgcgctggccggg
ttcatggcgctgatcgaagcgctcgagagcgatgtcgtcgacatgccgctgccggagaag
atcgaccacgtgctgcaacgctcgggcttgcgcgatcactacgccaacgagtcgcgcggc
cagctcgattcgcgcaccgacaacctcgacgaactggtctcggtcgcctcgcgcttcagc
cgcagcgacgaagacgaagccgcggcgatgccggaactgatcgccttcctcagctacgcc
gcgctcgaggccggcgaaggccaggcccaggccggcgaggacggcgtgcaactgatgacc
ctgcacagcgccaagggcctggagtttccgctggtgttcctcggcggcctggaagagggg
ctgtttccgagcagccgttcgaccgaggagtccggtcggttggaagaggaacgccgtctg
gcctatgtcggcatcacccgtgcgcgcgaaaaattggtgctgagctacgccgagacccgg
cgcatccacggcatggagacctacggctcgccgtcgcgcttcctgcgcgagattccgagc
cagttgctgcacgaggtgcggccgaaggtgcaggtgtcgcggccgatgtacaacaattca
gggcgtcgcgacggcggcggcctcaaccgcggccacgcggcgatcgaagcgccgccggtc
aagctgggcgcgcaggtgcgtcatgcgagcttcggcaccggcacggtcaccgattacgag
ggcagcggcgcgcatgcgcgggtgcaggtgaatttcgatgacgtcggcagcaagtggctg
gtgttggcgtatgcgaatctggttccggcgtga
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