Lucilia cuprina (Australian sheep blowfly): 111677380
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Entry
111677380 CDS
T06013
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
lcq
Lucilia cuprina (Australian sheep blowfly)
Pathway
lcq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lcq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111677380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcq03019
]
111677380
03041 Spliceosome [BR:
lcq03041
]
111677380
Messenger RNA biogenesis [BR:
lcq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
111677380
Spliceosome [BR:
lcq03041
]
Complex B
Other components
Prp19-related factors
111677380
Complex C
111677380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_12
Mad3_BUB1_I
TPR_15
ARM_TT21_C
PPR
TPR_10
RPN7
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
111677380
NCBI-ProteinID:
XP_023294251
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All DBs
Position
6:2466239..2469394
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AA seq
878 aa
AA seq
DB search
MSNNELGSLAMEIDFPEEDVPYEEEILRNAYSVKHWLRYIDHKAKAPNNAVNIVYERALK
ELPGSYKIWYNYLRTRRKQVRGKCITDPMYEEVNNTFERALVFMHKMPRIWMDYGSFMTL
QCKITRTRHVFDRALRALPITQHHRVWPLYLKFVQKFDIPETAVRIFRRYLKLAPDDAEE
YIEYLLSVGRLDDAAQQLASIVDNEHFVSRQGKSNHQLWNELCDLISKNPDKVHSLNVDA
IIRGGLRRYTDQLGHLWNCLADYYVRSGLFDRARDIYEEAIQTVRTVRDFTQVFDEYAQF
EELSLNKRMEFVANDPNATEEDDIDVELRLARFEHLMERRLLLLNSVLLRQNPHNVHEWH
KRVKLYEDKPHEIINTYTEAVQTVQPKLAVGKLHTLWIEFAKFYESNGQVEDARVVFERG
TEVEYVKVEDLASVWCEWAEMEIRQENFDAALKLMQKATVMPKRKVAYHDDTETVQMRLY
KSLKVWSMYADLEESFGTFKTCKAVYDRIIDLKICTPQIIINYGLFLEEHNYFEEAFRAY
EKGIALFKWPNVYDIWNAYLTKFLKRYGGSKLERARDLFEQCLENCPPEHAKYFYLLYAK
LEEDHGLARHAMAVYDRATSAVKPEEMYDMYNIFVKKAAEIYGLPRTREIYEKAIECLPE
ENMRHMCVRFAEMETKLGEIDRARAIYAHCSQVCDPRITADFWQTWKEFEVRHGNEDTMR
EMLRIKRSVQATYNTQVNMMAAQYIANNTPADAAGGDAMRMLDAKAAEANNQQKDKLPLK
PQSSTASNIMFVRGEIQGGSAKDKVVNPDEIDIGDSDEDEDEDMDDDDEENNEAQKVTRK
DENDVIMKKLKIEQKTIPSKVFGGLKPAKNDEDDDDDD
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacaatgaattgggctctttggccatggaaatagattttcccgaggaggatgtt
ccctatgaggaggagattttgcgtaatgcctactctgtcaaacactggttacgttatatt
gatcacaaagctaaggcgcccaataatgccgttaatattgtttacgaaagagctctaaag
gagctgcccggcagttataagatatggtataactatttacgcacccgcaggaagcaagta
cgtggcaaatgtattaccgatcccatgtatgaggaagtgaataatacttttgaaagagct
ttagtctttatgcataaaatgcctcgcatttggatggattatggttccttcatgacatta
cagtgtaagattacacgcacccggcacgtttttgatcgtgctctaagagctcttcctatt
acccaacatcatcgtgtatggcctttgtatttgaaatttgtgcaaaaatttgatattccc
gaaacggcggtaagaatctttagacgttatttaaaattggctccagatgatgctgaggag
tatattgaatatttgctgagtgtgggacgtttagatgatgctgcccagcagttggctagt
atagtggacaatgaacattttgtttctagacagggaaaatcaaatcatcagctttggaat
gagttgtgtgatttgatatcgaaaaatccggataaagtacattccctaaatgtggatgcc
attataaggggagggctgaggagatataccgatcaattgggacatttgtggaactgtttg
gctgactactacgtccggtccggtctctttgatagagcacgtgatatttacgaggaagcc
atacagaccgtaagaactgttcgagattttactcaagttttcgatgaatacgctcaattt
gaggaattgtccttaaacaaacgcatggagtttgtggcaaacgatcctaatgctaccgaa
gaagatgacatagatgtagaattgcgcttggcacgttttgaacatctaatggaaagacgt
cttttgttgctaaacagtgttctactgcgtcaaaatccacacaatgtacacgagtggcat
aaacgtgttaaactgtatgaagataaacctcatgagatcatcaatacctacacagaggct
gtgcaaacagtgcaacccaaattggctgtgggaaaacttcatactttatggatagaattt
gccaaattctatgaatccaatggtcaggtggaagatgctcgtgtcgtatttgaacggggc
actgaggtggaatatgttaaggtagaagatttagccagcgtttggtgtgaatgggctgag
atggaaattcggcaggagaatttcgatgcagctcttaaacttatgcaaaaggctacggtt
atgcccaagcgcaaggtagcctaccacgatgacacggaaactgtgcaaatgcgcctatac
aaatcgttaaaggtttggtccatgtatgctgatttggaagaatcatttggtacctttaaa
acttgcaaggctgtctatgatcgtataatagatttaaaaatctgtacaccacaaatcatt
attaactatggtttgttcttggaagaacacaattactttgaggaggcttttagagcttat
gaaaagggtattgctctcttcaaatggcctaatgtttacgatatatggaatgcttatctc
accaaattcctcaaacgttatggtggttctaaactggaaagagctagagatttgtttgaa
caatgtttggaaaattgtcctccagaacatgccaaatatttctatttgctctatgccaaa
ttggaagaagatcatggtttggcaagacatgccatggcggtatatgatagagctactagt
gctgtcaagcccgaagaaatgtatgatatgtataatatatttgttaaaaaggccgcagag
atttatggtctgcctcgcactagagaaatctatgaaaaggccattgaatgtttgcccgaa
gaaaatatgcgtcatatgtgtgtaagatttgctgaaatggaaaccaaattaggagaaata
gacagagctagagcgatatatgcacattgttcacaggtctgtgatccccgcattacggct
gacttttggcaaacttggaaagagtttgaggttagacatggtaatgaagataccatgcga
gaaatgttgcgtatcaaacgttctgtacaggccacttataatacccaggttaatatgatg
gccgcccaatatatagccaataacacaccagctgatgctgccggcggtgatgctatgcgt
atgctagatgccaaagcagctgaggcaaataatcaacaaaaagataaactaccactcaaa
ccacaatcatccacagcctcaaatattatgtttgtacgtggcgaaatacaaggtggttct
gctaaagataaagtggttaatcccgatgaaattgatattggcgacagtgatgaagacgaa
gatgaggatatggatgacgatgatgaggaaaataatgaagcgcaaaaagtcacacgtaaa
gatgaaaatgatgtgataatgaaaaagttaaaaatagaacaaaaaaccataccatctaaa
gtgtttggtggtttaaaaccggctaaaaatgatgaggatgatgatgatgatgattga
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