Lucilia cuprina (Australian sheep blowfly): 111678401
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Entry
111678401 CDS
T06013
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
lcq
Lucilia cuprina (Australian sheep blowfly)
Brite
KEGG Orthology (KO) [BR:
lcq00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcq04147
]
111678401
00535 Proteoglycans [BR:
lcq00535
]
111678401
00536 Glycosaminoglycan binding proteins [BR:
lcq00536
]
111678401
Exosome [BR:
lcq04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
111678401
Proteoglycans [BR:
lcq00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
111678401
Glycosaminoglycan binding proteins [BR:
lcq00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111678401
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Motif
Other DBs
NCBI-GeneID:
111678401
NCBI-ProteinID:
XP_046808967
LinkDB
All DBs
Position
5:complement(49553224..49885102)
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AA seq
970 aa
AA seq
DB search
MAMVISTRAKLLITALIVFFLLGVVLVTGSTKGWFIPNRYNGERVAARIQATSIYDGSGM
PPPQSQYPHERPYRTIKGEKGERGPKGPPGDSIRGPPGPPGPAGPKGEPGSFPPFIDFAS
NPEAKYTGKCTCNASDILEAIKDNDILRETLRGPPGLPGKEGKTGAPGRTPLVERSLMQY
IKRKTGATGVPGERGAPGPKGDRGERGDPGPRGPEGLQGSKGEPGVDGMPGVMGPPGPPG
PPGLPENYDINWNPTRTFKESLMGNSMGALRSSSPGPKGEPGIKGEMGRSGERGQPGQKG
ERGDPGMTGEKGDRGHTGPHGPSGAKGEPGQPGIPGISGAPGAPGLKGDRGLPGEIGPMG
PPGPAGQIVYADMPFGLQNTTQCTCPAGPAGPIGPRGPPGYDGAPGLNGEPGPAGSIGLT
GLPGAKGEKGEKGLRGLAGPKGDRGPEGPPGQAFFAGGFEGMAMNGTKGDKGDKGMRGRR
GKPGTAGPIGPPGKPGLMGEMGHAGRPGMPGPKGDMGPKGPKGDSGGREGPKGDKGDRGQ
DGRDGMPGPPGLPAAAGEGVQYVPMPGPPGPPGPPGPPGMPGLTISGPKGEPGMESRNGY
YGDASYYGRPDELKALRELQDLRDRPDGSSGPPGPPGPPGPPAGGSRHHDHDEEEETPYY
SAASSWNMRIVPGAVTFPNIDEMTKKSAMNPPGTLAYITEEEALLVRVNKGWQYIALGTL
VPIATPAPPTTIAPPVRVDIQSSNLLNNLPPLLNTPTFTTAPEYETWYPRMLRVAALNEP
YIGDLQGIRGADFACYRQGRRAGLLGTFKAFLSSRVQNLDSIVRVADRDLPVVNTRGDVL
FNSWKGIFNGQGGFFSQAPRIYSFSGKSVLTDPMWPQKHVWHGALPNGERSIDTYCDAWH
SGARDKFGYASNLLGNKLLDQERLTCDSKLIVLCVEALSQDRRKKRDLSDREFEFHTAEA
YEQHLKRVLT
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atggcaatggttatatcgacgcgtgctaaacttttaataactgctttaatagtcttcttt
ttactcggtgtagttctggtaactggttctacgaaaggttggttcatacccaatcgttat
aacggcgaacgtgttgctgctaggatacaggccacaagcatttacgatggcagtggtatg
cctccgccacagtcacaatacccacatgaaagaccatatcgtactattaaaggcgagaaa
ggtgaacgtggccctaaaggtcctcctggtgatagtatacgtggtcctcctggaccacca
ggtcctgctggtcctaaaggtgaaccaggttcatttcctccctttattgattttgctagc
aatcctgaggcgaaatacactggcaaatgtacatgcaatgcgtctgatatcctagaagcc
atcaaagacaatgatattttaagagaaacattaagaggtccaccaggactaccgggtaaa
gaaggcaaaactggagctccgggacgtacgcctcttgtggaaagaagtctcatgcaatat
attaagcgtaaaacgggtgctactggggtaccaggtgaacgcggtgcccccggtcctaaa
ggtgaccgcggcgaaaggggcgatcctggtcctcgtggtcccgaaggtctacaaggcagc
aagggtgaaccaggtgtcgatggtatgcctggtgtaatgggtcctcccggaccgccaggc
ccacctggtttgccagagaattatgatatcaattggaatcctacaaggaccttcaaggaa
tctttaatgggcaattcaatgggagcattgcgtagcagttcaccaggacctaaaggagag
ccaggcattaaaggtgaaatgggccgtagtggtgaaagaggtcaaccaggacaaaagggt
gaacgtggtgatcctggcatgacgggtgaaaaaggtgataggggtcatactggaccccat
ggacccagcggtgccaaaggtgaaccaggacaaccgggtataccaggtatttcgggagct
cctggtgctcctggactcaaaggtgatcgtggtctgccgggtgagataggtcccatgggt
ccacccggccccgccggacaaatagtctatgccgatatgccatttggtttacagaataca
acacagtgtacatgccctgccggaccagcaggtcctataggtccacgtggcccacccggt
tatgatggtgcacccggtttgaacggtgagccgggtccagctggttcgatcggtttgacc
ggcctgcctggtgcaaaaggcgagaaaggcgaaaaaggtttgcgtggtttggctggaccg
aaaggtgatcgcggacctgagggtccaccaggacaggcctttttcgctggtggtttcgaa
ggcatggctatgaatggcaccaaaggtgacaagggagataagggtatgcgtggtcgtcgc
ggcaaaccgggaacagctggaccaatcggacctccgggcaaaccaggtttaatgggcgaa
atgggacatgcgggtcgtccaggtatgccaggaccaaaaggtgatatgggtccaaaggga
cctaaaggagactcaggaggtcgtgaagggcccaaaggtgataaaggtgatagaggacaa
gatggtcgtgatggtatgccgggaccacctggtttgccggcagcagcaggagaaggtgta
caatatgttcctatgccgggaccaccaggaccacctggaccacccggtccaccaggtatg
cctggcctaacaatatcgggacccaaaggagaacctggcatggaaagtcgtaatggttat
tatggtgatgcctcctactatggaagaccggatgaactcaaagctttgcgtgaactacaa
gatttaagagatcggccagatggcagttcgggacctcctggtcctccaggtccaccagga
cccccggctggtggcagtcgtcatcatgatcatgatgaagaagaggagactccctattat
tcagcagcttcttcttggaatatgcgtattgttccgggagccgtaacatttcccaatatt
gatgaaatgacaaagaaatctgccatgaatccacctggtactttggcatatataactgaa
gaggaagcgttattagtgagagtcaacaaaggttggcaatatattgcgcttggaacattg
gtaccaattgctacacccgccccaccgacaacaattgcaccaccagtacgtgttgatata
caatcatcgaatttattaaataatttaccaccattactcaatacacctacgtttactaca
gctccggaatatgaaacgtggtatccacgtatgttacgagtggcggctttgaatgaaccg
tatattggcgatttacagggtatacgcggtgcagattttgcctgttatcgtcagggtaga
agagctggtttattgggaacatttaaagcattcctgtcatcaagagtacaaaatcttgat
tcaattgtacgtgtcgcagaccgcgatctaccagtagtgaataccagaggtgatgtacta
ttcaattcatggaagggcatatttaatggacaaggtggtttcttttcacaagcaccacgc
atttatagtttcagtggtaaaagtgttttaacggatccaatgtggccacaaaaacatgtc
tggcatggtgcattaccaaatggagaacgttcaattgacacatactgtgatgcctggcat
tcgggggcaagagataaatttggctatgccagtaatttgctggggaacaaactacttgac
caggagcgtctaacatgtgatagtaaactaatagtattatgtgttgaggctttatcacag
gatcgacgaaaaaaacgcgatttgagtgacagagaattcgagttccatacggctgaggca
tatgaacagcatttaaaaagagtactgacttga
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