Lucilia cuprina (Australian sheep blowfly): 111682684
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Entry
111682684 CDS
T06013
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
lcq
Lucilia cuprina (Australian sheep blowfly)
Pathway
lcq03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lcq00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111682684
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcq03021
]
111682684
03019 Messenger RNA biogenesis [BR:
lcq03019
]
111682684
Transcription machinery [BR:
lcq03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111682684
Messenger RNA biogenesis [BR:
lcq03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
111682684
U7-dependent histone pre-mRNA processing factors
111682684
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT
Glyco_tran_WbsX
Motif
Other DBs
NCBI-GeneID:
111682684
NCBI-ProteinID:
XP_023300445
LinkDB
All DBs
Position
4:92891316..92895548
Genome browser
AA seq
1175 aa
AA seq
DB search
MDPILGRSQFLSETVNLFTDEKTANARARVVEWINDINTSEPQVKCELLVKIQETIMSSC
VELLEEFLEHILSLAHDTNMDVRKQVVGFMEQICKVKVEYLGQVVNVISMLLRDRSPQVI
KRVIQASGSIYKNGLQWICSQQELTDSCEQAWNVLSLIKAQILDLIDNENDGIRTNAIKF
LEGVVVLQSYPDEDSQKRENDFSLENIPESLKIIKRKKLEEEALNIFDILLKFHAATHIS
SVNLIACTGSLCTIAKLRPSLMGPVIEAFKSLNSNLPPTLTDSQVSSVRKSLKMQLMALL
KNKGSYEYQSVIKHLLNDLGASQGEVQRAIPKMDKQEQMRRQKRILENATSNLHKKMRLG
KAQHTDDKDETQEMVVDEEELEKQRQKSTKVNEKFLAEHLRSTNTVVNLVVEYLPKLPDT
APEKFLQEYTPIKDLSIAQQVSKISNLLGQQMTEQKIGPGSAAFTKEVPMKVLRKDKTNS
NKVIEEVMEVEEPSGSETVILDDEQQRKEEATKKLRENMERMKGEQELIERMKQKAKALK
LQEITKPFPRPLKEKFLMDAVKRILHAERQCIVGGVSAKRRKILTVMAATFPDNVRYFIF
EFIMMDIKQRIDLAFSWLYEEYCLLQGFTRHSYVKSENRPDHAYNELLGQIIMGIINKCE
LRDKILLLRRVYLEAPLLPDESLKPLLKLILMEEYSAYGLDLLKELAILRPPRKAKFLRH
LLNFCIHERLDIREKALEHIVTLYTTQKLLSARIDEFALELASYLEKEIPPASMFGEEYG
RPGVETAWREEIAKICLIMLLTLAPYRAELYLEKLTQIYSNTSADLKRTILRSIDPAIKK
LGAENPLLLQLIEDSPKGCETLIIRIIYILTERQATPAPELVLRVKELYQNKIKDVRVLI
PILSGLTRQEILSALPKLIKLNQVVVKEVFNRLLSIGAEFANQTMATTPTDILVALHTID
INECDLKCIVKATSLCLAEKEVFTQDVLIGVLQQLVEIVPIPTLLMRTIIQSLTLYPRMA
NFVLNILQRLILKQVWRQKVIWEGFLKCLQRLKPSSLPIMLHLPPQQLMNALEQCPDLRP
LLIEYAQSIEEEPMSGITPQIMDIITGKAVDVFITDDTGGFISVENIKKEVDEPMEISTI
STVTTVPVPLRVRSPDGQAAGAAHDVNQPLPPGED
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atggatcccatattgggccgttcccagtttctcagtgaaactgtaaacttgtttaccgat
gaaaagacagccaatgcaagagctcgtgtggtggaatggatcaacgatatcaacacctcg
gaaccacaggtgaaatgtgaattgttggttaaaatccaagaaaccattatgagttcatgt
gttgagctgttggaagagtttttagaacacattttatctttagctcatgataccaatatg
gatgtacgcaaacaggtggtgggttttatggagcaaatatgcaaagtaaaagttgaatat
ttgggtcaagtagtcaatgttatatccatgctgttgcgtgatcgttctccccaagtaatc
aagcgtgttatacaggcatccggtagcatttataaaaatggtttacaatggatatgtagt
caacaagaattaacggatagctgtgaacaagcctggaatgttttgagcttgattaaggca
caaattctagatcttatagacaatgaaaacgatggcatacgcacaaatgccatcaagttt
ctagagggtgtggtggtgctgcaaagctatcccgatgaagatagccaaaagagggaaaac
gatttctctttggaaaatataccagaaagtcttaaaataattaaacgtaaaaagttggaa
gaggaagctctcaatatttttgatattctattgaaatttcatgcggccacacatatttct
tcggtgaatctgatagcatgcacgggtagtctctgcactatagccaagttgaggcccagc
cttatgggtcctgtaatagaggcatttaaaagcttaaattccaatttgccacccactcta
acagattcacaagttagttcggtgagaaaaagtttaaaaatgcaattgatggctttgctt
aagaataagggttcgtacgagtatcaatcggttataaaacatttattaaatgatttggga
gcctctcagggtgaagtgcaaagagctataccaaaaatggataaacaggagcagatgaga
agacagaaacgtattttggaaaatgctaccagtaatttacacaaaaaaatgcgtttgggc
aaagcacaacatactgatgataaagatgaaactcaagagatggtggtggatgaggaggag
ttggaaaaacaaagacaaaaatccactaaagttaatgagaaatttctggcagaacatttg
cgttccaccaatactgtggttaatttggtggtggaatatttgcctaaattaccagataca
gcaccggaaaaatttttgcaagaatatacgcccattaaggatttatctatagcacaacag
gtttcgaaaatctccaatttattaggccaacaaatgactgaacagaaaataggtcccggc
tcggcagcctttaccaaggaggtgcccatgaaagtcttaagaaaagataaaacaaacagt
aataaagtcattgaagaagtaatggaagtggaagagccctctggttccgaaactgttatt
ctggatgatgaacaacagcgcaaggaggaggctactaaaaagctaagagaaaatatggaa
cgtatgaaaggcgaacaggaactcattgaacgcatgaaacaaaaagctaaagctttaaaa
ttacaagaaattaccaaacctttcccgagacctttaaaggaaaaatttctcatggatgct
gttaaacgtatactgcatgccgaacgtcagtgtatagtgggtggtgtgtcggctaagaga
agaaaaattttaaccgtaatggcagcaacatttcccgataatgtacgctactttatcttt
gaatttatcatgatggatattaagcaaagaattgatttagcattctcctggttgtatgaa
gaatattgtttactacaaggttttaccagacattcctatgttaaatctgaaaatcgtcct
gaccatgcctacaatgagctattgggacaaatcattatgggcattataaataaatgtgag
ttaagagataaaattttgctcttgaggagagtgtacctggaggctcccttattgcccgat
gaaagtttaaaacctttattgaaattgattttaatggaagaatattctgcttatggtttg
gatttgctaaaagaattggccattttgaggccaccacgtaaggcaaagtttttaagacat
ttgctaaacttttgcatacacgagaggttggatataagagaaaaagctttagagcatata
gttactctatacactacccaaaaactgttaagcgcccgcatagatgaattcgctttagag
ttggcttcttatttggaaaaagaaataccacccgctagcatgtttggtgaggaatatggt
agacccggtgtagaaaccgcctggagagaagaaattgccaaaatatgtcttattatgcta
ttgactttggctccttatagagcggaattgtatttggaaaaattaacccaaatatatagc
aatacttcggcagatttaaaacgcactatattacgatccattgacccagccattaaaaag
ttaggtgctgaaaatcctttactattgcaattgatagaagattcacccaagggttgcgaa
accttaattatacgcattatttatatactaaccgaaagacaagctacacctgcccccgaa
ctcgtgctaagggttaaggaattatatcaaaataaaattaaagacgtaagagttctaata
cccatactcagtggtttaacgcgccaagagattctcagcgctttgccaaagttaattaaa
cttaatcaggtggtagttaaggaagtcttcaatcgtttgcttagcataggagcagaattt
gccaatcaaactatggcaaccacacctactgatatattggtggctctacacaccattgat
atcaatgaatgtgatttgaagtgtatagtcaaggccacttctttgtgtttggcagaaaag
gaggttttcactcaggatgtcttgattggtgtactgcagcaattggtggaaattgtaccc
atacctacattgctaatgcgtaccataatacaaagtttaacgttatatccacgtatggct
aattttgttttaaatatattacaacgtttaatcctcaaacaagtatggcgtcagaaggtc
atatgggagggttttctcaagtgtttacaacgtttgaaaccttcttcactgcccattatg
ttgcatttgcctccacaacaattaatgaatgccctcgaacagtgtcctgacttaaggcca
ttgttaattgaatatgctcaaagtatagaggaggagcctatgtcaggtataacaccacaa
ataatggatataataacgggtaaagctgtagatgtttttataacggacgatacgggtggc
tttatttctgtggaaaatattaaaaaggaagtggatgaacctatggaaatttccactata
tctacagttaccacagtaccagtacccttgcgtgttcgttctccagatggtcaggcagcg
ggtgcagcacatgatgttaatcaacctttgcctccaggagaggattaa
DBGET
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