Lucilia cuprina (Australian sheep blowfly): 111684747
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Entry
111684747 CDS
T06013
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
lcq
Lucilia cuprina (Australian sheep blowfly)
Pathway
lcq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lcq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111684747
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcq03041
]
111684747
Enzymes [BR:
lcq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111684747
Spliceosome [BR:
lcq03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
111684747
Complex B
111684747
Complex C
U2 SnRNP specific factors
111684747
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
DUF1699
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
111684747
NCBI-ProteinID:
XP_023302713
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All DBs
Position
5:complement(39210411..39213232)
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AA seq
782 aa
AA seq
DB search
MSNYRGIGGGGFPYKSNSNRGGASMNAVPPPSSLNHRGYQKGKIKDNTSAAGTSKYGYST
LESISQFSNSQNYIGKRKACTEDDYFDDDDEPAPQQQAYQPAPGSPGYQKNKQQESDSDE
DPLDQFMAGIEQQVEKEKVRKDSSVAAVAGMGSSQSKGVRGDIDEEDDEESYYRYMEENP
QAGLRDDGSDVEIEYDEDGNPIAPPKNKNIDPLPPIYHSEIEYESFEKNFYTPHEDIANL
DEEQVRDLRKTLGVKVTGPEPPKPVTSFGHFGFDEPLMKAIRKAEYTQPTSIQAQAIPAA
LAGRDLIGIAKTGSGKTAAFIWPMLVHIMDQRELKPGDGPIGLILAPTRELSLQIYNEAK
KFGKVYNINVVCCYGGGSKWEQSKALEQGAEIVVATPGRMIDMVKMKATNLRRVTFLVLD
EADRMFHMGFEPQVRSICNHVRPDRQTLLFSATFKKRIERLARDVLTDPVRIVQGDLNEA
NQDITQYVYVFPNPMQKWNWLLLNLVRFLSEGSVLIFVTKKADAESVANNLLVKEYNCLL
LHGDMDQADRNKVITQFKRKECDILVATDVAARGLDIPHIKNVVNYDIARDIDTHTHRIG
RTGRAGEKGTAHTLVTEKDKEFAGHLVRNLEGADQQVPDDLMDLAMKSSWFRSSRFKQGK
GKKPTGSHTGLGYRERSGFGSKSSSSSSSANSNDFSSSSSYTSTSKSLSSAGPATDRYAA
MREAFRSQYQSQFKPSTDRTWEETVPESGVFAAPAPPPPSLMNNANSNAQGEKRKTKKSR
WN
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgagtaattatcgaggaatagggggcggtggatttccatacaaatccaactctaatcgt
ggaggtgcttctatgaatgcagtaccaccaccttcatcactaaatcatcgtggatatcaa
aagggcaaaataaaggataatacaagtgcggctggtacctcgaaatatggttactccacc
ttagagtctataagtcaattttccaactcacaaaattacataggaaaacgtaaggcctgc
acagaggatgactactttgatgatgatgacgaaccggcacctcaacaacaggcttaccaa
ccggcaccgggttctcccggctatcaaaagaacaaacagcaggaaagtgattcagatgaa
gatcctctggatcaatttatggctggtatagaacaacaggtggaaaaggaaaaagtacgt
aaagatagcagtgtggcagcagttgctggtatgggttctagtcaatccaagggtgtgaga
ggtgatatcgacgaagaagatgatgaagaaagttactatcgttatatggaagaaaatcct
caagctggcttaagagatgatggttctgatgttgaaattgaatatgatgaagatggcaat
cccatagctccaccaaaaaataaaaacattgatcctcttcctcccatataccattccgaa
atcgaatatgaaagttttgagaaaaatttctatactcctcatgaagacatagccaatttg
gacgaggaacaagttagagatttgcgcaaaacattaggtgttaaggtgacaggcccagaa
ccgcctaagccggtaacctcatttggacattttggctttgatgagccactgatgaaggcc
atacgtaaagctgaatatacccagcctacttctatacaggcgcaagccataccagctgct
ttggccggtagagatcttataggtattgccaaaacgggttctggtaaaacggctgcattt
atttggcccatgttggtacacataatggatcaacgtgaacttaagccaggcgatggaccg
attggtttgattttagctcccactcgtgaattatccttgcaaatctataacgaagctaag
aaatttggtaaggtgtataatatcaatgtagtttgctgttacggcggtggctctaaatgg
gaacagagtaaggcattagagcaaggagctgaaattgtagtagccacaccaggtcgtatg
atagacatggttaaaatgaaagccacaaatctgaggagagttacatttttggttttggat
gaagcagatcgcatgtttcatatgggatttgagcctcaggttcgttcaatttgcaatcac
gtcagaccagatcgtcaaactctactcttttcggctacttttaagaaacgcattgaacgc
ttggctcgtgatgtcctaaccgatcctgtgcgcattgtccaaggcgatctcaatgaggcc
aatcaagacattacacaatatgtatacgtttttccaaatccgatgcaaaaatggaattgg
ttgctattaaatcttgtacgttttctttccgaaggaagtgttttgatttttgtcaccaaa
aaagcagacgccgaatcggtggccaataatttgctagttaaagagtacaattgtctgctg
ctacatggtgacatggatcaggcagatcgtaataaagtcataacacaatttaaacgtaag
gaatgcgatattctagtggccaccgatgttgcagctcgtggtttagatataccccatatt
aagaatgttgttaactacgatatagctcgagatattgatacacatacccatcgtattggt
cgtaccggtagagcgggtgaaaagggtacagcccatacactggtaacagaaaaagataaa
gaatttgctggtcatttggtgcgcaatttggagggtgccgatcaacaagtgcccgatgat
ttaatggatttggccatgaaaagttcttggttccgcagctcacgctttaagcagggcaaa
ggcaaaaagcccactggtagccatacaggtttaggttatcgtgaacgctctggctttggc
tcgaaatcatcgtcttcttcctcatccgcaaactctaatgattttagttctagttcaagc
tatacttctaccagcaaatctttgtcttcagctggtccggccacagatcgctatgcagcc
atgcgtgaagcttttcgttcacaatatcaatcacaatttaaaccttcaacagatcgtact
tgggaggaaactgttcctgaaagtggagtatttgcagcacccgcaccacctccgccttct
ttaatgaataacgccaatagtaatgctcaaggggaaaaacgtaaaactaagaaaagtcgt
tggaactga
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