Lucilia cuprina (Australian sheep blowfly): 111685162
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Entry
111685162 CDS
T06013
Name
(RefSeq) probable DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
lcq
Lucilia cuprina (Australian sheep blowfly)
Pathway
lcq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lcq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
111685162
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcq03400
]
111685162
DNA repair and recombination proteins [BR:
lcq03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
111685162
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
AAA_22
Motif
Other DBs
NCBI-GeneID:
111685162
NCBI-ProteinID:
XP_023303172
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Position
5:complement(5640691..5645483)
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AA seq
1157 aa
AA seq
DB search
MSKKLNTSLGSSVASPKNSLFNYFSRSPATLEKKKIPVTPTAGGEEKQQKDEKNVMEKEN
LQNKTNKEENSAKKQKIKKSKIIDSDEEEEIATTSKKRRRLVLQDSEEEEEEKTKKSKGK
AKDDSDYEPDKDEEMPSENEEEKEDSEVESSPEMKKNHNNNNEPKSKKTKLDATLTAGSF
MDKLEQLKAGSEGKTSKKQEAKCEEIITSNLDEPVVWPHQKLEFLKPDKIKDKQGRRPDH
PDYDPSTLYVPPKFLDTLSPGVRQWWVLKSESFDCVLFFKVGKFYELYHMDADVGVNELG
FTYMRGEFAHSGFPEISFDKMASVLVERGYKVARVEQTETPDMMTERCKRIKPTKFDKVV
RREICQITSRGTQVFGSQCQITPNHQPNYMLAIVEQQSAQSGGCSNYGICFIDTSIGDCY
LGEFEDDTNCSRLHTLLSHNMPVLVVLEKANIQEKTQDIMRTVLSGVLKEYMPNVGSMQS
TAEKTLKELAEKYYAGGDNWPLVLRTMQSETDHLGLTPHANARLALKALGLCLNYMKKCH
VAEKVLPMARYHLYQPPDTLALDKIPSKISSKQRAHMVLDATTLMNLRITGEEHSLQSTL
DQCCTKFGKRLLHHWLCAPSCVLSAIVERQEAITDFLNNPSLLQEARALLAPLPDFERHL
AQIHHFGSKIVQENHPDGRAIFFEEKQYNKKKMQNFISILKGFESLLQIPTIFQEADSKL
LKRLTQYKNNDGIFPDLTDELKFFKQAFDHTKAAETGVIAPESGVDEDYDRAEAKIKEIN
KKLQEYLVEQEKIFGCRINYFGSDKKRFQLEIPEARCRKVDSSYSLEGQKKGVARRYTTE
ETRSFLKQMQAAEDERNTVLKDLSRRIFEKFSQHYDLWKQCVDCVAHIDVLASLAEYART
QQVICIPQLEDVVAGKQAFIEIEEGYHPCVSADTYIPNGVVLGCNGTAPLSILTGPNMGG
KSTLMRQVGLLAVMAQIGAHVPAQSCRLSLVDRIFTRLGAQDDILSGHSTFLVELNETSL
ILKHATANSLVLLDELGRGTATYDGTAIAASVVNFLADLKCRSLFSTHYHNLIDFFHKDE
RITLGHMACMVENEDCDDPTQETVTFLYKYSAGACPKSYGFNAAKLAGMPHNIIKRAYTV
SGLFKIEILHLNVQSIV
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaaaactaaacaccagcttgggtagctctgttgcctctcccaaaaacagctta
ttcaattatttctctcggtcgccggcgactctagagaaaaagaaaattcctgtgacacca
acagctggaggcgaggaaaaacaacagaaagacgagaaaaatgtaatggaaaaagaaaat
cttcaaaataaaacgaataaagaggaaaactcggccaagaagcagaagatcaagaaatca
aaaatcattgattctgatgaagaagaggaaatagccaccacctcaaagaaaagaagaaga
ttggtattgcaagattctgaggaggaagaggaggaaaaaacgaaaaaatctaaaggaaaa
gctaaagatgatagtgactacgaacccgataaagatgaagaaatgccctcggagaatgaa
gaagaaaaagaggattcggaggtagaatcatctccggaaatgaagaaaaatcataacaat
aacaatgaacccaaatcaaagaaaacaaaattggatgccactctaacagcgggtagtttt
atggataaattagaacaactaaaagctggtagtgagggaaaaacttcaaaaaagcaagaa
gccaaatgtgaagaaattattacctccaatttagacgagccggtggtgtggcctcatcag
aaattggaatttttaaaacctgacaaaatcaaagacaaacaaggacgtagaccggatcat
ccagactatgatccctccacactgtatgtgccacccaagtttttggatactttatcaccg
ggagtacgtcagtggtgggttttaaaatcggaaagttttgattgtgttctcttctttaaa
gtgggcaaattctatgaactttatcacatggacgctgatgtaggagtaaatgaactgggt
tttacatatatgcgcggtgaatttgctcattctggctttccggaaatatcttttgataaa
atggcctcggtgttggtggagagaggctataaagtggcgcgtgttgagcagacagaaact
cctgacatgatgactgaaagatgtaaacgtattaaacccaccaagtttgataaggtggtg
cgcagagaaatttgccaaattacttcccggggtacacaagtctttggcagtcagtgccaa
attacacccaatcatcaacccaactatatgttggccatagtagaacagcaatccgcgcag
tcaggtggctgcagcaattatggcatttgttttatagacacttctataggtgattgttat
ttgggagaatttgaggatgatacaaattgttcccgtttacataccctactctcccataat
atgcctgtcttagtggtattggaaaaagccaatattcaagaaaagactcaagatataatg
cgtactgttttaagtggtgttttaaaggagtatatgcccaatgtcggttccatgcagagt
acagctgagaagaccttaaaagaattggccgaaaaatattatgctggtggcgataattgg
cctttggttttaagaaccatgcagtcggagactgatcacttaggcttaactcctcatgct
aatgccaggctggctttgaaagccttaggtttatgcctgaactatatgaaaaaatgtcat
gtagcggaaaaagttttaccaatggcacgttatcatctctaccagccacccgatacttta
gccttggataaaattccctcaaaaatctcctctaaacaaagagctcatatggttttagac
gctaccactttaatgaatttacgtattaccggtgaggaacactcgctgcagtcaacattg
gatcaatgctgcaccaagtttggtaaacgtttgctgcatcattggttgtgtgctccttcg
tgtgttttgagcgctattgtcgagcgtcaagaagctattacagattttctcaataatcca
tcattgctgcaagaggctagagctttattggctcctttgccagatttcgaaagacatttg
gcacaaattcatcattttggcagtaaaattgtgcaggaaaatcatcccgatggtcgggct
atattttttgaggagaaacagtataataaaaagaaaatgcagaatttcatttccatactc
aagggatttgagtctctattacaaattcctactatttttcaagaggcagactcaaaatta
cttaaacgtttgacacaatacaaaaataacgatggcatatttccagacctcaccgatgaa
cttaagttctttaagcaagcttttgatcatacaaaagcagccgaaactggtgttattgca
cccgaaagtggtgtagatgaagattatgacagagccgaagcgaaaatcaaagaaatcaat
aaaaagcttcaagaatatttagttgaacaagaaaaaatattcggttgtcgtatcaactac
ttcggctcggataaaaaacgttttcaattggaaatacctgaagcacgttgtcgtaaagtg
gatagcagctattctctggagggccaaaagaaaggagtagcacgccgttacactacagaa
gaaaccaggagttttcttaaacaaatgcaagcggctgaagatgaacgtaatacggtttta
aaagatttatctagacgtatatttgagaaattctcccaacactatgatttatggaaacaa
tgtgttgattgtgtggctcatatagatgttttagcctctttggcagaatatgctaggaca
caacaagttatctgtatacctcaactagaagatgtggtcgctggcaaacaggcatttata
gaaattgaagaaggttatcatccttgtgtttcagccgatacctatatacccaatggtgta
gttttaggctgtaatggtacagctcctctttctatattaactggtcccaatatgggtggt
aaaagtacacttatgcgtcaggtgggtttgctagcggtaatggctcaaattggtgctcat
gtaccggctcagtcgtgtcgtctgtcgctggtagatcgtatatttaccagactaggagct
caggatgatattctatcgggtcattcaactttcttggtggaattaaatgaaacatcttta
atattaaaacatgccacagcaaatagtttggtattgttagatgaattgggacgtggtact
gctacctatgatggcactgctatagccgcctctgttgtcaactttttggccgatcttaaa
tgtagatctttgttctctactcattatcataatcttatagatttctttcataaagatgaa
cgtattacattgggtcatatggcctgcatggtggaaaatgaagattgtgatgatcctact
caagaaacggttactttcctatataaatattctgctggagcatgccccaaatcgtatggt
ttcaatgctgccaaattggcaggaatgccacataatataatcaaaagagcgtatacggta
agtggattatttaaaatagaaattttacacctaaacgttcagtctatagtctag
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