Lucilia cuprina (Australian sheep blowfly): 111688424
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Entry
111688424 CDS
T06013
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
lcq
Lucilia cuprina (Australian sheep blowfly)
Pathway
lcq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lcq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111688424
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcq03041
]
111688424
Enzymes [BR:
lcq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111688424
Spliceosome [BR:
lcq03041
]
Complex A
U2 snRNP components
U2 related factors
111688424
Complex B
111688424
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
111688424
NCBI-ProteinID:
XP_023306700
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All DBs
Position
3:12058588..12062972
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AA seq
1180 aa
AA seq
DB search
MSKSSSGRDRDRERERDRDRDYERERDYERERDRDRDRERKRRYSRSRSRSPKDNRFARN
GNGNSRMRDDRKRDRNERDPRDMDRNRRDDKRRRQSPSKSKDYEREKFRQAERDRERERE
KERERDRERERQRDREREREREREREAEYARNTTSTPPIIIKADSSNSESEEEELDKEEE
QRRLELEMIKRRERIERWRAERKLRELEANKKELKSFQPPPTTTATAKKWSLEDESEEED
NSFAVDIKKEPDSPPSKFHRIKKPKDDEDDEKVYRLKSKSIVIAAKAKIEALREEEEAKE
EKQKLQIQLQQQKIQQQQLEQKKLQEKLEMDQLEQKSKTADNTANNEAAEEDDEIDPLDA
YMKEVDKEVRNVNHIITQPKKNQQGVVILTGVAKKTTKDKNKGELIEQNMDSLEYSSEEE
LEDIKDTAASLANKHRKELAKIDHSGVDYAPFRKNFYVEVPELARMTQQEVEKYRTELEG
IQVKGKGCPKPIKTWAQCGVSKKEMDILRKLSFEKPTPIQCQAIPAIMSGRDLIGIAKTG
SGKTLAFILPMFRHILDQPPLEDGDGPISIIMAPTRELCMQIGKDIRKFAKSLNLRAVCV
YGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGF
EPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSIVCKDVEQHVAI
MEDDAKFFKLLELLGIYQEKGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRD
STILDFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSA
WTFLTYDQGRYAGDIIRALELAESVVPEELQKLWNDYKNAQEAEGKKVHTGGGFSGKGFK
FDEQEANAAKESKKLQKAALGLADSDDEEDIEQDIDQQIEQLFAAKRTVKDTSIPTPAVT
MVATPTAGSTVIAGSAPAATASTAATAGGMSSDKLELAKRLASKISSNKNLGVDGKISTQ
VAADAILKGSAAGQPMITARSVVEQLAAKLNNKLNYQPKDEEESASISGLLPNQPNSFTK
YEEELEINDFPQQARWKVTSKEALAQISEYSEAGLTVRGTYVPNGKNPPEGERKLYLAIE
SCSELAVQKAKREITRLIKEELLKLSSAHHVFNKGRYKVL
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaagtagttcaggaagagatcgtgatcgtgaaagggaacgtgacagagaccgg
gactatgagagggagcgggattatgaaagagaacgtgatagggatcgcgatagagaaagg
aaacgtcgttattccagaagtagatctcgatcgccaaaggataataggtttgcgcgtaat
ggcaatggaaatagccgaatgcgagatgataggaaacgtgatcgcaatgaacgagaccca
agggacatggatcgcaacagaagggatgataagcgcagaaggcaatcaccatcaaaatcg
aaagattatgaacgcgagaaatttcgtcaagcagaacgcgatcgagagcgggaacgtgaa
aaggaacgcgaaagagatcgtgagcgagaacgtcaaagggatagagaaagagaacgtgag
cgtgaacgcgaaagagaagctgaatatgctaggaatacaacatctacaccgccaataata
attaaagcagattccagtaactctgaatctgaggaagaggagctcgacaaagaagaggaa
caacggcgtttagaacttgaaatgataaaacgtcgtgaacgcatagaacgttggcgtgcc
gagcgcaaacttcgagaattagaagcaaataaaaaagaattaaaatcatttcaaccgcca
ccaacaactacggctactgctaaaaaatggagtcttgaagacgaatcggaggaggaggac
aacagttttgcagtagacataaagaaagaaccggattcaccgccatcaaaattccatcgt
atcaaaaaacccaaagatgacgaagatgacgagaaagtctatagattaaaatcaaagagt
attgtaatcgctgccaaagctaaaatcgaagctctcagagaagaagaggaggctaaagaa
gagaaacaaaaacttcaaattcagctacagcagcagaagatccaacagcaacagttagag
cagaagaaactacaggaaaagctggaaatggatcagctggagcaaaaatccaaaacggca
gataatacagccaataatgaggcggctgaagaagacgatgaaatcgatccactagatgca
tatatgaaagaagtcgacaaagaagtacgcaacgttaatcatattattactcaacccaaa
aaaaatcaacagggtgtcgttattcttactggtgtggctaagaaaaccacaaaagataaa
aataaaggagaacttattgaacaaaacatggatagtctagagtattctagcgaagaagaa
ttagaggatataaaggatacagcagcgagtttagcaaataaacatcgcaaggaattggct
aaaatcgatcattccggcgttgattatgccccatttcgtaaaaatttctatgtggaagtt
ccggagcttgcgcgcatgacacagcaagaagttgaaaaatatcgtactgaattggaggga
atacaagttaagggtaaaggatgtccaaagccaattaagacatgggctcagtgtggtgtt
agcaaaaaggaaatggatattctacgtaaattaagttttgaaaaaccaactcccatacaa
tgtcaagcgattccggctattatgtctggacgtgatcttataggtattgctaaaacaggc
agtggcaaaacgctagcattcattttaccaatgtttaggcacattttggatcaacctcca
ttagaagatggcgatggtccaatttcgataattatggctcctacccgtgaactatgcatg
caaattggcaaagatattaggaaatttgctaaaagtctaaatctacgagcagtatgtgtc
tacggtggcactggtatctcggagcaaatagctgaactgaaaagaggcgccgaaattatt
gtatgtactccgggacgtatgatagacatgttggcagccaactcgggacgtgtaactaat
ttaagacgtgtcacgtatatagtgttggatgaggcagatcgtatgttcgatatgggtttc
gaaccgcaagtaatgcgcattatagataatgtacggccagatcgacagacagttatgttt
agtgccacattccctcgtcaaatggaagccctggcacgtcgtattctaaagaaacccata
gaagtaattgttggaggccgatcaattgtgtgtaaagatgtcgaacagcatgttgccata
atggaagatgatgctaaattctttaaacttttagaactgttaggtatttatcaggaaaag
ggtagtattatagtttttgtggataaacaagagaatgccgatatacttttgcgcgatctt
atgaaagcttcatatccttgcatgagtctgcatggaggtattgatcagttcgatagagat
tcgacaattttagattttaaatctggtaaggtgcgtttattgatagctacgtctgtagct
gctcgcggtttagacgtgaaggatttaattttagttgttaattatgatgtacccaatcat
tatgaagattatgttcacagatgtggtcgtactgggcgggctggtaaaaagggcagtgca
tggacttttctaacttacgaccaaggtcgttatgctggcgacattataagagctttggaa
cttgccgagtctgtagtacccgaagaattgcaaaaactatggaatgattataagaatgct
caagaagctgaaggaaagaaagttcatactggcggcggttttagcggtaaaggttttaag
ttcgacgagcaagaagctaatgccgccaaggaaagcaaaaaacttcagaaagctgctttg
ggattggctgattcggacgatgaagaagatattgaacaagatattgatcaacaaattgaa
cagctgtttgctgcaaaacgtacagtcaaagacacttccatacccacgcctgcagttacc
atggttgccacccctacggcgggtagtacggtcattgctggttccgctccagcagctact
gcatctacggcagccactgctggaggtatgagctccgataagcttgaattggctaaacgt
ctggcttcaaagataagctccaataaaaatttgggcgtcgatggcaagatcagtactcaa
gtggctgccgatgctattcttaagggctccgcagctggacaaccaatgattactgcccgt
tccgtagtggaacagctggctgctaaactgaacaacaaactcaattaccaaccaaaagac
gaagaggaaagtgcttcaatatctggactgcttccaaatcaacccaattcctttacaaaa
tacgaggaggaactcgaaattaatgatttcccacaacaggcacgctggaaagttacttct
aaggaagctttagctcaaatatccgaatattcggaagctggtcttactgtgcgcggcact
tatgttcccaatggtaaaaatccaccagaaggtgaacgtaaactttacttggccatagaa
agttgcagtgaattggctgtacaaaaagcgaaacgtgaaataacacgtcttatcaaggag
gagttactaaaactcagttcagctcatcatgtcttcaataagggaagatataaagtactt
taa
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