Lucilia cuprina (Australian sheep blowfly): 111691226
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Entry
111691226 CDS
T06013
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
lcq
Lucilia cuprina (Australian sheep blowfly)
Pathway
lcq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lcq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111691226
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcq03041
]
111691226
Enzymes [BR:
lcq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111691226
Spliceosome [BR:
lcq03041
]
Complex C
Other components
Step II factors
111691226
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
S1
WHD_HA2
DEAD
AAA_22
GIPC1_GH2
AAA_19
nSTAND3
AAA_30
Flavi_DEAD
BIV_Env
Motif
Other DBs
NCBI-GeneID:
111691226
NCBI-ProteinID:
XP_023309649
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All DBs
Position
6:8385760..8390351
Genome browser
AA seq
1296 aa
AA seq
DB search
MDELQKLEHLSLVSKLCTELDNHLGINDKDLAEFIVELEEKNPTFEEFRKALIENGAEFP
DSLISNLQRIIKLMKPSADGKQAKSLDDSSSGSASNKLSSKTEHLAMMFPGLALANDKFS
AVDAPYESSASEEENDREPDEKKEKKVVKEKIHKEELEAVDAAMLELEALAPGMETKATK
SERSDRKKADRRSRSRSRSRERHRGGSDRERKRDKSRDRHRDNEASCSNGKERYRDKERD
RRSRSRSRDRQRRSRSRDTARRHRRSRSRSRERQNERKKRSRSRERRRRSRSKSRDRSRR
SRSRSKERSNRKRRSGSHETKMREKMPPPAAMADDPEPGKIYSGKVANIVPFGCFVQLFG
LRKRWEGLVHISQLRSEGRVTDVTEVVNRNSNVKVKVMSVTGQKVSLSMKEVDQDTGQDL
NPLSHAPPPDSELKDRNPDRPFGGGTSLLNLQGGGDNDEDDSRKRVTRISSPERWEIKQM
ISSGVLDRSELPDFDEESGLLAKDEDDEEDIEIEIVEEEPPFLAGHGRALHDLSPVRIVK
NPDGSLAQAAMMQSALSKERREQKMLQREQDMDAVPTGLSKNWIDPLPDEDSSRTLAANV
RGMGSAPMEVPEWKKHVIGGKKSSFGKKTDMSLVEQRQSLPIYKLRDDLIKAVTDNQILI
VIGETGSGKTTQITQYLAECGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYT
IRFEDCTSPETSIKYMTDGMLLRECLIEAELKGYSVIMLDEAHERTIHTDVLFGLLKTAV
QKRPELKLIVTSATLDAVKFSQYFFEAPIFTIPGRTFPVEVLYTKEPETDYLDASLITVM
QIHLREPPGDILLFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIF
DPAPPGSRKVVIATNIAETSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVVTPISQAAAK
QRAGRAGRTGPGKCYRLYTERAYRDEMLPTPVPEIQRTNLATTVLQLKTMGINDLLHFDF
MDAPPVESLVMALEQLHSLSALDDEGLLTRLGRRMAEFPLEPNLSKMLIMSVALQCSDEI
LTVVSMLSVQNVFYRPKDKQALADQKKAKFNQIEGDHLTLLAVYNSWKNNKFSNAWCYEN
FVQIRTLKRSQDVRKQLLGIMDRHKLDVVSAGKNSVRIQKAICSGFFRNAAKKDPQEGYR
TLVDSQVVYIHPSSALFNRQPEWVIYHELVQTTKEYMREVTTCDPKWLVEFAPSFFRFSD
PTKLSKFKKNQRLEPLYNKYEEPNAWRISRVRRRRN
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
atggatgaattacaaaaattagaacatttatctttggtctccaagttgtgcaccgaactg
gacaatcacttgggtattaatgacaaagatttggccgaattcatagtagaattggaagaa
aaaaatcccacatttgaggaatttcgcaaggcccttatagaaaatggagcagaattcccc
gattctttaatttctaatcttcagcgtataataaagttaatgaaaccttcggcagatgga
aaacaagcaaaatctttggatgattctagcagtggaagtgcatccaataaattgtctagt
aaaacggaacatttggccatgatgtttcccggcttggcattggctaatgataaatttagt
gcagtagatgcaccatatgaaagttcagcttcggaggaggaaaatgaccgtgagccggat
gaaaagaaagagaaaaaagtggtaaaagaaaaaatacataaggaggaattggaagcggta
gatgcagccatgctagagctggaagccttagcacccggcatggaaacaaaagccacaaaa
agtgaaaggagtgatagaaagaaggccgatagaagatcacgctcgagatctagatctcgt
gagagacataggggcggcagtgatcgtgaacgtaaaagggataaaagtcgtgatcgtcat
agagataatgaggcatcctgcagtaatggcaaagaacgctatagagataaagaacgtgat
agacgttcaagatcacgttctcgtgacaggcaaagacgttcccggtcgcgtgacacagcc
cgtagacacagacgttctagatcacgttctagagaaagacaaaatgaacgcaaaaaacgt
tccagatcaagagaacgcaggcgacgttcacgttctaaatcccgagatagatcaagacgt
tctcgttcccgttcaaaagaacgttctaaccgtaaacgtagatccggttctcacgaaacg
aaaatgcgtgagaaaatgccaccaccagcggccatggcagatgatccagaacctggtaaa
atatattcgggaaaagttgcaaatattgtgccttttggctgttttgtgcaacttttcggt
ttgcgcaaacgttgggagggtttagtgcatatctcacagctgcgttccgaaggacgtgtt
accgatgtcactgaggtggtaaatcgaaattccaatgttaaggttaaagtcatgtcagtt
accggacaaaaagtatcactctcaatgaaggaagttgatcaggatacgggccaggatttg
aatcctcttagtcatgctcccccgccagatagtgaacttaaagatcgtaaccccgataga
ccatttggaggaggaacttctctgctaaatctgcaaggtggtggtgataatgatgaagat
gattcacgtaaacgtgtcacacgcatttcgagtccggaacgttgggaaattaagcaaatg
atcagttcgggagtattagatcgcagtgaattgcccgatttcgatgaagaatctggtctt
ttggccaaggacgaagacgacgaggaggatatagaaattgaaattgttgaagaagaacct
ccctttctggcgggtcatggcagagctttacatgacttatcgcccgtgcgtatagttaaa
aatcccgatggttcattggcccaagccgccatgatgcaatcggctctctcaaaagagcgt
agagagcagaaaatgttgcaaagagaacaagatatggatgcggttcccacgggcctaagt
aaaaattggatagatcccttaccggatgaagattccagccgcacattagccgctaatgtc
cgaggcatgggttcggctcccatggaagtgcccgagtggaaaaaacatgttattggtggc
aaaaagtcttcgtttggcaagaagactgacatgtctctagtcgagcaacgtcaatctttg
cctatctacaagctaagagatgatttgattaaggctgttaccgataatcaaattctgata
gttattggagaaacaggttcgggcaaaacaacgcaaattacccaatacttggcggagtgt
ggtttcactgcacgtggcaagatcggctgtacccaacctaggcgtgtggctgctatgtca
gtagccaagagagtggcagaagaatttggttgtcgtttaggccaggaagtgggttacact
atacgttttgaggattgcaccagtccagaaacctctataaaatacatgacagacggtatg
ttgttaagagaatgtctcatagaggctgaattaaaaggctactccgtcattatgttggat
gaggctcatgaacgtaccatacatactgatgttttatttggtctgctgaaaactgccgta
caaaaacggccagaattaaaactgattgtcacctcggccacattggatgccgtgaaattt
tcacaatatttctttgaggcacccattttcaccatacccggtcgcacattccccgtagag
gttttgtatactaaagaaccggaaactgattacttagatgcctccttgattaccgtcatg
caaatacatttgagagaaccgcccggtgatattttacttttcttgaccggtcaagaggaa
atcgatacggcatgtgaaattttatacgaacgtatgaaaagtttgggacccgatgtaccc
gaattaattatattgcctgtttattctgcactaccgtcggaaatgcaaactagaattttt
gatccagcaccaccgggcagccgtaaagtcgtaatagctacaaatattgcagaaacttcg
ctaacaattgatggtattttctatgtggtcgatccaggatttgtaaaacaaaaggtgtac
aactctaaaactggcatggattctttggtcgtaacgcccatttcgcaggctgctgctaaa
caacgtgctggtcgcgctggtcgtactggtcccggaaaatgttatcgtctttatacggaa
agagcttatcgtgatgaaatgttgccaacaccagtaccagaaatacaacgtaccaattta
gccaccactgttttacaattgaagactatgggtattaatgatttgttgcatttcgatttc
atggatgccccaccggtagaatcattagtaatggctttagaacaattgcattccctatcg
gccttggatgatgagggtctcttaacacgtctgggacggcgaatggctgaatttccctta
gaacccaatctctcaaaaatgctcatcatgtcggtggctctacaatgttctgatgaaatc
ttaaccgtggtctctatgttgagtgtgcaaaatgttttctatagacccaaagataaacag
gccttggccgatcagaaaaaggccaaatttaatcaaatcgaaggtgatcatttgactctg
ctggccgtctataacagttggaaaaataataaattctctaatgcctggtgttatgagaat
tttgtgcaaattagaacgctcaaacgctcacaggatgtacgtaaacaattgcttggcatt
atggacagacataaactggatgtggtgtcagccggtaaaaattcggtacgtatacagaaa
gccatttgttcgggtttctttcgcaatgcagccaaaaaagatcctcaagagggctatcgt
actctggtcgattctcaagtggtgtatatacatccatcctcggctttatttaatcgtcaa
cccgaatgggttatctaccatgaactggtacagacaactaaggaatatatgcgtgaggta
acaacttgtgatcccaaatggttggttgaatttgctccctccttctttagattctcagat
ccaacgaaattgagtaaatttaagaagaatcaacgtttagaaccactctataataaatat
gaagaacccaatgcctggcgtatatcgcgggtgcgtcgtagaaggaattaa
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