Lactobacillus crispatus: LCRIS_00270
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Entry
LCRIS_00270 CDS
T01222
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lcr
Lactobacillus crispatus
Pathway
lcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LCRIS_00270 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcr03019
]
LCRIS_00270 (deaD)
03009 Ribosome biogenesis [BR:
lcr03009
]
LCRIS_00270 (deaD)
Enzymes [BR:
lcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LCRIS_00270 (deaD)
Messenger RNA biogenesis [BR:
lcr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LCRIS_00270 (deaD)
Ribosome biogenesis [BR:
lcr03009
]
Prokaryotic type
rRNA helicases
LCRIS_00270 (deaD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
DeaD_dimer
NAT10_TcmA_helicase
Vts1
Motif
Other DBs
NCBI-ProteinID:
CBL49717
UniProt:
D5H132
LinkDB
All DBs
Position
278018..279502
Genome browser
AA seq
494 aa
AA seq
DB search
MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPIL
QMIDKKEKAIQAVIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLKHHV
PSILVGTPGRLLDHLKRKTINLDQVKAVVLDEADEMLDMGFIQDIESILKYAKNRQQTLL
FSATMPKPILRIGEKFMDHPKIVRIKAKELTADLIEQYFVRAKESEKFDIMCRLIDVQGP
DLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKRFREGKLDILVATDVA
ARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRTIEQLTK
KKMSPLRPPTDDQALHGQLKQAKIEIEDLMNGDLGKYTQGASELLDNYSALDLVAAFLKN
LAKDEVKVKITPEKPLPYKGDGRRRRGKGHGRSNNNHGRDNHRRRNNNSYRQNGNRGKRG
RGNGHEFVIKNKKD
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
ttgaaattttcagaattaggattaaatgatgcgcttcttaaagcgattaaacgttcaggc
tttgaagaagcaactccaatccaagaacagactattccccttgctttgcaaggcaaagat
gtaattggtcaagcccagactggtaccggtaagacagctgcgtttggcttgccaatttta
cagatgatcgacaaaaaagaaaaagcaattcaagcggttattattgaaccaacgcgtgaa
cttgctattcagacgcaagaagaattattccgtttaggtcgtgacgaacatgctcatgtt
caagtggtctatggtggagctgatatcggtcgtcaaattcgctcattgaaacaccatgta
ccatcaattttagttggtacgccagggcgtttgcttgaccacttgaaacgcaaaactatt
aatttagatcaagttaaggctgtcgttctagatgaagcagatgaaatgctcgatatgggt
tttattcaagatatcgaaagtattttgaaatatgctaagaaccgacaacagactttactc
tttagtgctacaatgcctaagccaattttgcggataggcgaaaaatttatggatcaccca
aaaattgtccgcattaaagctaaggaattaactgctgatttgattgaacaatattttgtt
cgtgctaaagagtctgaaaaatttgatattatgtgtcgactaattgacgtgcagggtcca
gatttggctttagtctttggtcgcaccaaacgtcgcgtagatgaacttacgcgcggtttg
caagcgcgtggctacaatgcggcgggaattcacggtgatctatcgcaagcgcgtagaatg
tcagttttgaaaagatttcgtgaaggtaagctagatattctggttgctactgatgtagct
gcccgcggactcgatatttcaggtgtaacccacgtttataattatgatattccccaagat
ccggattcatatgttcaccgtattggtagaactggtcgtgcggggcaaaatggaatctct
gttacttttgttacgccaaacgagattggctatatgagaaccattgagcaattgactaaa
aagaagatgtcgccgcttcgtccgccaacagatgatcaggcattacatggtcaattaaag
caagcaaaaattgaaattgaagatttgatgaacggtgatttgggtaaatatacccaaggg
gcaagtgagctgctagataactattcagctctcgacttagttgcagcctttttaaagaac
ttggctaaagatgaggttaaagtcaagattaccccagaaaagccgttaccatacaagggt
gatggtcgccgccgtcgtggtaaaggtcatggccgtagcaataataatcatggacgcgat
aaccaccgccgtcgtaacaataattcataccgccaaaatggaaaccgcggtaagcgtggt
cgtggcaacggacatgaatttgtaatcaagaataagaaagattaa
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