Lactobacillus crispatus: LCRIS_01020
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Entry
LCRIS_01020 CDS
T01222
Symbol
hupB1
Name
(GenBank) DNA-binding protein HU
KO
K03530
DNA-binding protein HU-beta
Organism
lcr
Lactobacillus crispatus
Brite
KEGG Orthology (KO) [BR:
lcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lcr03032
]
LCRIS_01020 (hupB1)
03036 Chromosome and associated proteins [BR:
lcr03036
]
LCRIS_01020 (hupB1)
03400 DNA repair and recombination proteins [BR:
lcr03400
]
LCRIS_01020 (hupB1)
DNA replication proteins [BR:
lcr03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
LCRIS_01020 (hupB1)
Chromosome and associated proteins [BR:
lcr03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
LCRIS_01020 (hupB1)
DNA repair and recombination proteins [BR:
lcr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
LCRIS_01020 (hupB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_euk_2
HU-CCDC81_euk_1
HU-CCDC81_bac_2
DUF2267
DUF2780
Motif
Other DBs
NCBI-ProteinID:
CBL50467
UniProt:
D5H382
LinkDB
All DBs
Position
1027791..1028066
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AA seq
91 aa
AA seq
DB search
MANKAELVSEVASKTKLTKKQVANTVDAILDSIQENLAKGEKVQLIGFGTFEVRHRAARK
GRNPQTGDEIEIPASEVPAFKPGKALKDAVK
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atggcaaataaggctgaattagtttcagaagttgcttcaaaaactaagttaactaagaag
caagttgcaaatactgttgatgctatccttgattcaattcaagaaaaccttgctaagggt
gaaaaggtacaattaatcggttttggtacttttgaagtacgtcaccgtgctgcacgtaag
ggccgtaacccacaaactggtgatgaaatcgaaatcccagctagtgaagtacctgcattt
aagccaggtaaagctcttaaggatgccgttaagtaa
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