Lignipirellula cremea: Pla8534_13750
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Entry
Pla8534_13750 CDS
T06949
Symbol
hrpB
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
lcre
Lignipirellula cremea
Brite
KEGG Orthology (KO) [BR:
lcre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcre03019
]
Pla8534_13750 (hrpB)
Enzymes [BR:
lcre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Pla8534_13750 (hrpB)
Messenger RNA biogenesis [BR:
lcre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Pla8534_13750 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
ABC_tran
AAA_19
nSTAND_NTPase5
nSTAND3
T2SSE
T2SSF
RsgA_GTPase
NACHT
AAA_23
Motif
Other DBs
NCBI-ProteinID:
QDU93595
UniProt:
A0A518DP34
LinkDB
All DBs
Position
1805328..1809227
Genome browser
AA seq
1299 aa
AA seq
DB search
MMSQLSELESQLAQTLLADRYRLRRKLRGIAQAIEQGKPFDRSLTRAAEEIHRSIEIREK
RRQQAPTVTLEESLPVSARAAEISAAIAENQVVVVCGETGSGKSTQLPKICLQLGRGIEG
MIGHTQPRRIAARSIAARLAEELQSPLGKDVGFKVRFTDTTRPETYVKLMTDGVLLAETQ
SDRFLNLYDTIILDEAHERSLNIDFLLGYFKGLLPKRRDLRLIITSATIDAERFAEHFAD
ERGPAPVIEVSGRAYPVELRYRPLLNEDDPDLQQAVCEAVREAAAIDTGDILIFLPTERE
IRETTAALRKIHIPGDNGRRTEILPLYARLSNQEQNKVFRPHSYRRIVLATNVAESSLTV
PGIRFVIDTGVARISRYSPRSKVQRLPIEAVSKASADQRKGRCGRVGPGICFRLYTEEDY
LGRDPYTTPEIRRTNLASVILQTTALKLGAIEQFPFLDPPKPEHIRDGYKTLYEIGAIDE
DRELTDLGRQLSRLPVDPRIGRMILAAHDEHCLGEMLIIASALELQDPRERPVEKREAAD
EMHARHVDEKSDFMSILKLWDFYHQLRSDLSRNQLRKACQKNFLSANRLREWTDVHRQLR
ELADQTGLLMSPRKNDYLAIHRALLTGLLSGVAFKSDAHEYTGAGGVKFHLWPGSGPFKK
KPQWIVAAEVVETTRRYGRTIAAIEPEWIEPLAQHLVKCSYSEPHWSKKNSAVMCYEKVS
LMGLPIVPKRRVRYGPIDPEYARELFLQHGLVEGDMPLRAPFLEHNAELLEQVKSLGAKT
RSREFIVDDRAIYRFYDGVLPEEVYDGQKLHKWRKLAEAENPRVLFMTESDLLEEEPVEM
ADEAFPDKLDVGPMALPLEYLYQPGDEADGVTLTTPLAGLNQLDADRLGWLVPGLLKEKV
IALIRSLPKQIRRNLVPAPEVAQQAISRLTYGEGPFLPAVAKVLSQLAEEPIPLDKFRLE
KLPDHLQMNVRIVDEGGAALAAGRDLHQLRSALSQEATESVAELDDSAWRRDDITTWDFD
DLPAQVEIPRGAIRVPAYPALVDQGNNVALRLFDSRAAAERATRGGIRRLYIRSEKKALR
AHVAWLPSLPQMKLFAGPLGGAAQLEQQLAELIADRAFLGDRPLPRTREQFQQQLKSGRD
QVQLAVQDILRVTSDLFAQYHQARLAVEEASSKNGFAIHDARRQLKALTAGEFLTDTPWR
WLQHLPRYLQAIVVRFDKLKQGGGPRDRASYDELAPWLEMYEQRRERLDEANLDDPELTE
FRWMLEEFRVSQFAQQLGTSVTISAKRLEKQWAKTTSPP
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcgcaactttcggaactggaatcgcaactcgcacaaaccttgctagcagatcgc
tatcggttgcgccgcaagctgcgcgggattgcgcaggcgatcgaacaggggaagccgttt
gatcgcagcctcacccgggcggcagaagagattcaccgctcgatcgaaattcgcgagaaa
cggcggcagcaagcgccgaccgtcacgctggaagaaagcctccctgtttccgcccgggcc
gccgagatttccgccgccatcgccgagaaccaggtcgtcgtggtctgcggcgagaccggc
tccggcaagtcgacgcagctccccaagatctgcctgcagctgggccgtggaatcgaaggg
atgatcggccatacgcagccccggcggatcgcggcccggtccatcgccgcccgcctggcg
gaagagctgcagtccccgctggggaaagatgtcggcttcaaggtgcggttcaccgacacc
acgcggccggaaacgtacgtcaagctgatgaccgacggcgtgctgctggcggagacgcag
agcgaccgattcctgaacctgtacgatacgatcatcctcgacgaagcccatgagcggtcg
ctcaacattgatttcctgctgggctatttcaaagggctgctgcccaagcgccgcgacctg
cggttaattatcacctccgccaccatcgacgcggaacgctttgccgagcatttcgccgac
gagcgcggaccggcccccgtgatcgaagtttccggccgcgcctatccggtcgagctgcgg
tatcgtcccctgctgaacgaagacgaccccgatctgcagcaggccgtctgcgaagcggtg
cgtgaagcggccgccattgatacgggcgacatccttatcttcctgccgaccgaacgggag
attcgcgagacgaccgcggcgctccgcaagattcatatccccggcgacaacggtcggcgg
accgagatcctgccgctgtacgcccggctgtcgaaccaggaacagaacaaggtgttccgg
ccgcactcctatcgccgcattgtgctggcgaccaacgtggccgagtcgtctctgaccgtc
cccggcatccgctttgtgatcgatacaggcgtcgctcgcatcagccgttattcgccgcgc
agcaaagtccagaggctgccgatcgaggccgtctccaaggcgtcggccgatcagcgcaaa
ggccgctgcggccgcgtcgggccgggcatctgctttcgcctgtataccgaagaagactac
ctgggccgcgatccgtacaccacgccggaaattcgccgcaccaatctggcgtccgtcatt
ctgcagaccacggcgctcaagctgggggcgatcgagcagttcccctttctcgatccgccc
aagcccgagcatatccgcgacggctataaaacgctgtacgaaatcggcgccatcgacgaa
gaccgggagctgaccgacctgggccgccagctcagccgcctgccggtcgatcctcgcatt
ggccgcatgatcctggccgcccacgacgagcattgcctgggcgaaatgctgatcattgcc
tcggccctggaactgcaggacccgcgggaacggccggtcgaaaaacgggaggcggccgac
gaaatgcatgcccggcatgtcgacgagaaatccgactttatgtcgatcctcaagctgtgg
gacttttatcaccagctccgctccgacctgtcgcgcaatcaactgcgcaaagcgtgccag
aaaaacttcctgtcggccaaccggttgcgggaatggaccgacgtccatcgccagttgcgg
gaactggccgaccagaccggcctgctgatgtcgccgaggaagaacgattacctggcgatt
caccgcgccctgttgaccgggctgctctccggggtggcgttcaagagcgacgcccatgag
tacaccggcgcgggcggggtgaagttccacctgtggccaggctcgggaccgttcaagaaa
aagccgcaatggatcgtggccgccgaggtggtcgaaacgacccgccggtacggccgcacg
atcgccgccattgaaccggaatggatcgagccgctggcccagcacctggtgaagtgttct
tacagcgagccgcactggagcaagaaaaactccgccgtgatgtgctacgaaaaggtctcg
ctgatggggctgccgatcgtaccgaaacgtcgggtgcgttacggcccgatcgaccccgag
tacgcccgggaattgttcctgcagcacggtctggtcgaaggcgacatgccgctgcgcgct
cccttcctggagcacaacgccgaactgctggagcaggtcaaatcgttgggcgccaaaact
cgcagtcgcgagttcatcgtcgatgaccgggccatctaccgcttctacgacggcgtcctg
ccggaagaagtttacgacggccagaaactacataaatggcggaagctggctgaagccgag
aaccctcgcgtcctgttcatgaccgaaagcgacctgctggaggaagagccggtcgaaatg
gcggacgaagccttccccgacaagctcgacgtcggaccgatggccttaccgctggagtac
ctgtaccagcccggcgacgaagccgacggcgtgacgctcacaaccccgctggccggcctc
aaccagctggacgccgaccgtctgggctggctggtgccgggcctgctcaaagagaaggtc
atcgcgctgatccgctcccttcccaagcagattcgccgcaatctggtgccggcgccggaa
gtcgcccagcaggcgatctcccggttgacctatggcgaagggcctttcctgcccgccgtc
gccaaggtgctttcgcagctggcggaagagccgatcccgctcgacaaattccgtctggaa
aaactgcccgaccacctgcagatgaatgtgcggatcgtcgacgaagggggcgccgccctg
gcggctggccgcgacttgcatcagctgcgttccgccctcagccaggaagcgaccgagtcg
gtcgccgagctcgacgacagcgcctggcgacgggacgacatcaccacctgggactttgac
gacctgccggctcaggtcgagatcccccgcggcgcaatccgcgtgccggcctatccggcc
ctggtcgaccagggtaacaacgtggctctgcggctgttcgattcccgggccgccgccgaa
cgggccacccggggcggcatccgccggctctacattcgctccgagaaaaaggcgctccga
gcgcacgtcgcatggctgccgtcgctgccgcagatgaagctgttcgccggtccgctgggc
ggagccgcccaactggagcagcagctggccgagctgatcgccgatcgcgccttcctgggc
gatcgtccgctgccccgcacgcgggagcagttccagcagcagctcaaatccggccgcgac
caggtgcagctggccgtgcaggacatcctgcgggtgacaagcgacttgttcgcacagtac
caccaggctcgcctggcggtggaagaagcgtcgtcgaaaaacggcttcgccattcacgat
gctcgccgtcagctcaaagcgctgaccgccggcgaattcctgaccgatactccctggcgc
tggctgcagcatctgccgcggtatctgcaggcgatcgtcgtccgttttgacaaactgaaa
cagggcggcggcccgcgcgaccgggccagctacgacgaactggccccctggctggagatg
tacgagcaacgacgggaacgcctggacgaagccaacctggacgaccctgagctgaccgaa
ttccgctggatgctggaagagttccgcgtgtcgcagttcgcccagcagctagggacctcg
gtcacgatcagcgcgaagcgcctggagaagcagtgggccaaaacgacgtccccgccctag
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