Lignipirellula cremea: Pla8534_25900
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Entry
Pla8534_25900 CDS
T06949
Name
(GenBank) hypothetical protein
KO
K03628
transcription termination factor Rho
Organism
lcre
Lignipirellula cremea
Pathway
lcre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pla8534_25900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcre03021
]
Pla8534_25900
03019 Messenger RNA biogenesis [BR:
lcre03019
]
Pla8534_25900
Transcription machinery [BR:
lcre03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Pla8534_25900
Messenger RNA biogenesis [BR:
lcre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Pla8534_25900
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
Spore_III_AA
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
QDU94783
LinkDB
All DBs
Position
complement(3422683..3424185)
Genome browser
AA seq
500 aa
AA seq
DB search
MTKPRGASSRDNFKRGRSDGPLTRPSMRANSDGYAHNGNGESVDPFDEEPLSLAEEIADE
SDRGVPKPGTNGDAVVAGDGETHIVKLQAMSMSELIEEARRQNVEDADSMKRQELIFNIL
KERVKLNGLMYGEGTLEILPDGFGFLRSPEYHYLSCPDDIYVSPSQIRRFGLRTGSTVSG
QIRPPKENERYFALLRVEAINYQDPNVMAQRVPFDELTPLHPDARIVMEHDPEDVSTRVV
DLVTPIGFGQRGLIVSPPRAGKTILMQRMAKAVLANYPEAYVIMLLIDERPEEVTDMERQ
VRGPHCEVVSSTFDEPSSRHVQVSQMVIEKAKRMVECGIDVVIFLDSITRLARAWNSECP
QSGKILSGGLDANALQRPKSFFGSARKTEEGGSLTIIATALIDTGSKMDDVIFEEFKGTG
NLEIVLDRKLVDRRIYPAIDINRSGTRREEMLMDPEEHRLTCVMRRVLNDMNGPDAMELL
VTRLEKAKTNAEFLMSMNAK
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaaccccgcggcgcgtcctcacgggacaactttaaacgtggccgcagcgacggc
cctttgacgcggccttcgatgcgtgcgaacagcgacggatatgcgcacaatggcaatggc
gagagtgtcgatccgttcgacgaagaaccgctctcgctggcggaagaaatcgctgatgaa
tccgaccgcggcgttcccaagcccgggaccaacggcgacgcggttgtcgccggcgacggg
gaaacgcatattgtcaaactgcaggcaatgtcgatgtccgagctcatcgaagaagcccgc
cggcagaacgttgaagatgcggatagcatgaaacggcaggagttgatcttcaacatcctg
aaagagcgggtcaagctgaacgggctgatgtacggcgagggcacgctggagatcctgccc
gacggcttcggctttttgcgcagcccggaataccactatctgtcttgccccgacgacatc
tacgtttctcccagccagatccggcgttttggtttgcggaccggatcaaccgtttcgggc
cagattcgcccgccgaaagaaaacgaacgttacttcgcgttgctgcgggtcgaggcgatc
aattaccaggacccgaacgttatggcgcagcgggtgccgttcgacgagcttacgccgctt
caccccgatgcgcggattgtcatggaacacgatccggaggatgtttccacccgcgtggtc
gatctggtaacgccgattggtttcggccagcgagggttgattgtcagcccgccgcgcgcc
ggcaaaaccattctgatgcagcggatggccaaggccgtgctggccaactatcccgaagcg
tacgtgatcatgctgttgatcgacgaacgcccggaagaagtcaccgacatggagcggcag
gttcgcggtccgcactgtgaagtcgtcagctccacctttgatgaaccgtcgtcgcgccat
gttcaggtgtcgcagatggtcatcgaaaaagcgaaacggatggtcgagtgcgggatcgat
gtcgtcattttcctggactccatcactcgcctggcccgcgcctggaactcggagtgcccg
cagtccggcaagatcctttccggcgggctcgacgccaacgctttgcagcggcccaagtcg
ttctttggctccgcccgcaagaccgaagaaggcggttcgctcaccattattgcgaccgcg
ctgatcgacaccggcagcaaaatggatgacgtgatttttgaagagttcaaaggcaccggc
aacctggaaatcgtgctggaccggaagctggtcgaccgtcgcatctatccggcgattgat
atcaaccgcagcggcacccgccgcgaagagatgctgatggatccggaagaacatcgcttg
acctgtgtcatgcggcgcgtgctcaatgatatgaacgggcccgacgcgatggaactgctg
gtcacgcgactggaaaaggcgaaaaccaacgccgagttcctgatgagcatgaacgccaag
taa
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integrated database retrieval system
