Lignipirellula cremea: Pla8534_26970
Help
Entry
Pla8534_26970 CDS
T06949
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
lcre
Lignipirellula cremea
Pathway
lcre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pla8534_26970 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcre03019
]
Pla8534_26970 (rne)
03009 Ribosome biogenesis [BR:
lcre03009
]
Pla8534_26970 (rne)
Enzymes [BR:
lcre01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Pla8534_26970 (rne)
Messenger RNA biogenesis [BR:
lcre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Pla8534_26970 (rne)
Ribosome biogenesis [BR:
lcre03009
]
Prokaryotic type
rRNA processing factors
Pla8534_26970 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Antiterm
Motif
Other DBs
NCBI-ProteinID:
QDU94889
UniProt:
A0A518DST0
LinkDB
All DBs
Position
complement(3556211..3557782)
Genome browser
AA seq
523 aa
AA seq
DB search
MKKEMLVNVSQPEECRIAIIEDGLLEELYIERASQDNYVGNIYKGKIVNLEPSIQAVFVD
FGVGRNGFLHVSDVEPQYFRQGGFDPLSGGEGDDDDEDRPKNRNRGGRPRVKPPIQEIFR
RGDEVVVQVIKEGIGAKGPTLSTYISIPGRYLVLMPALGRVGVSRKIEDEEARRRLRESM
LELNPPKGVGFIVRTAGQERSKKELSRDLAYLLRLWKVIVRRIKKQPSPSTIYEESDMII
RTIRDIVTADIDAIYVDEDDAFKRAKEFLQLVMPRHVSRLHQYEGKEPLFHKYKLEEEIC
RIHKREVPLNGGGSIVIDQTEALVAIDVNSGSFRIDDSAEESAFRLNMSAAKEIARQLRL
RDLGGVIVNDFIDMRKERHRRGLEKALRDSMKRDRARTKILRTSPFGLIEMTRQRVRPSL
KRSVYTDCPCCAGRGVVKTAESMAIEVVRMLMVASQQPKCKRVTVRVNDEVASYLNNKKR
KEIMALEDEGGVNIQILGSEALYPEHLEIDCRDVDGREITLPQ
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaggaaatgctcgtcaatgtgtcgcaaccggaagagtgccggattgccatcatt
gaagacggattactcgaagagctttacatcgaacgcgccagccaggacaactacgttggc
aacatctacaaaggaaagatcgttaatcttgaacccagtatccaggcggtctttgtcgac
ttcggcgtcggccgcaacgggttcctccatgtaagcgatgttgagccgcagtactttcgc
cagggggggtttgatcccctttccggcggcgaaggcgacgatgacgacgaggatcggccc
aaaaaccgcaaccgcggcggccgtccccgcgtgaaaccgccgatccaggagatcttccgc
cgcggcgacgaagtcgtggtccaggtcatcaaagaaggcatcggagccaaaggcccgacc
ctgtccacctacatcagcatccccggtcgttacctggtgctgatgccggccctgggacgc
gtcggcgtttcccgcaaaatcgaagatgaagaagcccgtcgtcgcctgcgcgagagcatg
ctggagctcaacccgcccaaaggcgtcggattcattgtccgcacggccggccaggagcgg
tccaagaaagaactgtcgcgcgacctggcctacctgctgcgtctttggaaagtgattgtc
cggcggatcaagaagcagccgtcgcccagcacgatctacgaagaaagcgacatgatcatc
cgcacgattcgcgatatcgtgacggccgacatcgatgccatctacgtcgacgaggacgac
gcattcaagcgggcgaaagaattcctgcagctggtcatgccgcggcacgtgagccgcctg
caccagtatgaagggaaagagccgctgttccacaagtacaagctggaagaagaaatctgc
cggatccacaagcgggaagtgcccctgaacggcggcggttcgatcgtgattgaccagacc
gaagcgctggttgcgatcgacgtcaacagcggcagcttccgcatcgacgactcggccgaa
gaaagcgccttccggctcaacatgtcggccgccaaagagatcgcccgccagctgcgactt
cgagacctgggcggcgtcatcgtcaacgactttatcgacatgcggaaagagcggcaccgc
cgtggactcgaaaaggccctgcgcgattcgatgaaacgcgaccgggcccgcaccaagatc
ctgcgcaccagtcccttcggcctgattgaaatgacccgtcaaagggtccggcccagcctg
aaacgcagtgtctataccgattgcccctgctgcgcaggacgcggcgtggtgaaaacggcc
gaaagcatggcgatcgaagtcgtccgcatgctgatggtcgccagccagcagcctaaatgc
aaacgggtgacggtccgcgtaaacgatgaagtcgcgtcgtacctcaacaacaaaaaacgt
aaagagatcatggccctcgaagacgaaggcggcgtgaacattcagattctcggcagcgaa
gcgctgtaccctgagcatctggaaatcgactgccgcgacgttgacggccgcgaaatcacc
ctgccccagtag
DBGET
integrated database retrieval system
