KEGG   Lignipirellula cremea: Pla8534_29650
Entry
Pla8534_29650     CDS       T06949                                 
Name
(GenBank) putative DEAD-box ATP-dependent RNA helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
lcre  Lignipirellula cremea
Brite
KEGG Orthology (KO) [BR:lcre00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lcre03400]
    Pla8534_29650
Enzymes [BR:lcre01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Pla8534_29650
    5.6.2.6  RNA 3'-5' helicase
     Pla8534_29650
DNA repair and recombination proteins [BR:lcre03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    Pla8534_29650
SSDB
Motif
Pfam: DEAD_assoc DEAD WHD_Lhr WHD_4th_Lhr WHD_3rd_Lhr Helicase_C ResIII Cas3-like_C_2 AAA_25 MarR MarR_2 HTH_IclR DUF7053
Other DBs
NCBI-ProteinID: QDU95153
UniProt: A0A518DTJ7
LinkDB
Position
complement(3942815..3947329)
AA seq 1504 aa
MSGDYGQAFRHFYNGRMPEELFHPLIGEWFAERFGVPTAAQREGWPRIAAGLNTLIAAPT
GSGKTLAAFLVCLDRLTRDWFEGTLEEGVRVVYVSPLRALSNDIERNLQQPLEEIRQLAI
KKGLKPPEIRAGVRTGDTTASQRAAMLRKPPHLLVTTPESLFLLLTSEKGRERLRTVDTV
IVDEIHALARDKRGSHLALSLERLTHLCHQPPVRIGLSATQRPIEKIAQFLAGSGRPCEI
VDAGHLRDLDLRIEAPDTELEAVCSNEQWGEAYARLAELVTQHHSTLIFVNTRRLAERVA
HRLTELLGEDAVASHHGSLAKELRHSAEQRLKDGTLKVIVATASLEMGIDIGYIDLVCQI
GSPRSIAAFLQRVGRSGHSLGAVPKGRLFPLTRDQLLECMALNRAVRRMQLDSIEIPEQP
LDILAQQIIAAAACEDWTCDDLYAMCQAAAPYASLSRADFDEVLLMCSEGVAQKKGALVY
YDRINNLVKGRRGARLAAIMSGGAIPEAADYRVVTEGERVTVGSVDEDFAIDSLAGDVFA
LGNMSWRIAHVRGGEVVVNDAQGAPPSIPFWFGEAPGRTIELSHEISQLRLDLAAIGTAE
ETPSPTVIGGSTPAWLEEECGAAEHAALQAITYVQSQRDALGLVPTHKKIVFERFFDESG
GMQLVVHAPLGSRINRAWGLALRKRFCRSFDFELQAAADDNGVLLSMGPQHSFAIDRLFT
MLTPENARDLLEQAALAAPMFQVRWRWNVTRALAVMRRQGGKKVPPHLQRFRSDDLLSAC
FPETVGCLENHHGDVEIPSHPLVRQTMHDCLHEAMDLVRWVELLADVQAGRVEFIARDTR
EPSPFAMELLNANPYAFLDDAPLEERRTRAVASRRGASNESLRDLSALDPAAIEQVVAEA
WPVVRDADELHDVLLSLTVLTPQEAEPWQAWAKELASAGRATLATLASGEAFWTAAEQTP
VVQAVYPGVQWEPEICLPETLQRELESASEGWLELVRSRVAVAGPITAAGLAKLLHLQPN
QTFVALEALEGEGLVLRGRFTAASRQANLPTSDPGIEWCERRLLARIHRLTLEGLRKAIQ
PASPQAFLHFLCEHHHLLDPGLRGGAASVKESLRQLQGFEAPAGAWEKRLLTARLGDYDP
AWLDQLFMGGELVWGRLRRNRRTHDNPLAVGLTRSAPITLLLREDLPRLLPPDRRPLPPV
DSSRKKSGGGRPVPVAPETAIGGPPAMEQVSLSAECAGVRLRANATDVLAALDQRGALFF
QEISAITGLLAAHLEEALRELAAWGLVTSDGFGAVRSIVAPPRSGRNGGRKFQAASAPMG
RWSRFPGMLPTVENDAHIEQWCWQLLARYGVVFRDLLARESTAPAWWELARKYRTLELRG
KIRGGRFVAGVGGEQFATEAAVKHLRALREGPTDERWCVISAADPLNLAGVVGHGERVTA
NHKNALIVQNGEFIAVLQADEQQFFREPPPPVKAAMGKALAMGRRIIDECPTPAARLAWS
ASPR
NT seq 4515 nt   +upstreamnt  +downstreamnt
atgtctggcgactatggacaggcgttcagacatttctataatgggcgtatgcctgaggaa
ctgtttcatccgttgattggggagtggtttgcggaacgctttggcgtgccgactgctgcc
cagcgtgaggggtggccgcggattgccgcgggcctgaatacgttgattgccgctcctacc
ggttcggggaaaacgctggcggcgtttctggtctgcctggatcggttgacgcgcgactgg
ttcgaggggacgctcgaagaaggcgtgcgggttgtgtatgtgtcgccgctaagggcgctc
agcaacgatatcgaacggaacctgcagcaaccgctggaggagatccgacagctggcgatt
aaaaaggggctgaaaccgccggagatcagggcgggtgtaaggaccggcgacacaactgcc
tcgcaacgcgccgccatgctgcgcaagccgccgcatctgctggtgacgacgcctgagtcg
ctgtttctgctgctcacttcagaaaaaggccgggagcggttgcggacggtcgatacggtc
atcgtcgatgaaattcatgccctggcccgggacaagcggggctcgcatctggccctgtcg
ctggaacgactgacgcacttgtgtcaccagccgccggtgcggatcgggctgtcggcgacg
cagcggccgattgagaaaatcgcgcagtttctggcaggttccggccgtccttgcgagatc
gtcgatgcgggccatctgcgggatctggatctgcggattgaagcacccgacacggagctg
gaagctgtttgttccaatgaacagtggggcgaagcgtacgcccggctggccgaactggtg
acgcagcaccatagcacgctgatctttgtgaacacccggcggctggccgaacgggtcgcg
catcgactgacggagctgctgggcgaagacgccgtggccagtcatcacggcagcctggcg
aaggaactgcggcactcggccgaacagcgtttgaaagacggcacgctcaaggtgatcgtg
gcgacggcctcgctcgagatgggcattgatatcggctatatcgatctggtctgccagatc
ggttcgccgcggtcgatcgccgctttcctgcagcgcgtcgggcgatcgggccattcgctg
ggagcggtgcccaagggtcgtctgtttccgctgacgcgggatcagctgctggagtgcatg
gcgctcaaccgggccgtgcggcgaatgcagctggattcgatcgaaatccccgagcagccg
ctggatatcctggcgcagcagatcattgcggcggccgcctgtgaggactggacgtgcgac
gacttgtacgccatgtgccaggcggcggcgccgtatgcttcgctcagcagggcggatttt
gacgaagtgctgctgatgtgcagcgaaggggtcgcccagaagaaaggggccctcgtttat
tacgaccggatcaataacctggtgaagggacgtcgcggcgcacgtctggcggcgatcatg
tcgggcggggcgattcccgaagcggccgactatcgggtggtgaccgaaggggaacgggtc
acggtcggttcggtcgatgaggacttcgccatcgacagtctggcgggcgatgtgttcgcc
ctggggaatatgtcgtggcggatcgcccatgtgcggggcggcgaggtcgtcgtcaacgat
gcgcaaggcgcgccgcccagcattccgttctggttcggcgaggctccggggcggacgatt
gaactgtcgcatgagatctcgcaactgcggctggatctggccgcgatcggcacagcggaa
gagacgccgtcgcccacagtaatcggcgggagtacgccggcctggctggaagaggagtgc
ggcgccgccgagcatgcggccctgcaggcgatcacctatgtgcaatcgcagcgggacgcc
ctgggcctggtgccgacgcataagaagattgtgtttgagcggttttttgacgagtccggc
ggcatgcaactggtggtgcatgccccgctgggatctcgcatcaatcgggcctgggggctg
gccctgcggaagcggttctgccggagctttgacttcgagctccaggcggcggccgatgac
aacggcgtattgttgtcgatggggccgcagcatagctttgcgatcgaccggttgtttacc
atgctcacgccggagaacgcccgggacttgctggagcaggccgcgctggcggctcccatg
ttccaggtgcgctggcggtggaacgtcactcgggcgctggccgtgatgcgtcgccagggc
gggaaaaaagtgccgccgcacctgcagcggttccgcagcgacgatctgctgtccgcctgt
tttcctgaaacggtgggctgtctggagaaccaccacggcgatgtggaaattcccagccat
ccgttggtgcggcaaacgatgcacgattgcctgcacgaagcaatggacctggtccgctgg
gtcgaactgctggccgacgtccaggcggggcgggtcgaatttatcgcccgggatacgcgg
gagccgtcgccatttgcgatggagctgctgaacgctaatccgtacgcattcctggatgac
gctccgctggaagaacgccgcacgcgggccgtggcgagtcgtcgtggcgcgtcgaacgaa
tcgctgcgcgacttgtcggcgctcgatccggcggccattgaacaggtggtcgcagaggcc
tggccggttgttcgcgatgcggacgaactgcacgacgtgctgctctcgctgacggtcctc
acgccgcaggaagcggagccgtggcaggcctgggcaaaggagctggccagcgccggcagg
gcgactctcgccaccttggccagtggggaagcgttctggacggcggcggagcagacgccc
gttgtgcaggcggtttatccgggcgtgcaatgggagccggagatctgtttaccggagacc
ctgcagcgggaactggagagtgcgagcgaaggctggctggaactggtgcggtcccgcgtt
gcggtggccggtccgattacggcggccgggctggcgaagctgctgcacctgcagccgaac
cagacgtttgtcgcgctcgaagcactggaaggggaagggctcgtattgcgggggcgtttc
accgcggcctcgcggcaggcgaacttgccgacaagcgaccccggcatcgagtggtgcgag
cgtcgtctgctggcccgtatccatcgcttgacgctggagggactgcggaaggcgatccag
cctgcttcgccgcaagcgttcctgcattttctgtgcgagcatcatcatctgcttgatcct
ggtttgcggggcggggccgcctcggtaaaggaaagtctgcgacagctgcagggctttgaa
gcgccggcaggcgcctgggagaaacggctgctgacggcccgattgggcgattatgatccg
gcctggctggatcagttgttcatgggcggcgagctggtctgggggcggctgcggcggaac
cgacgcacccacgataacccgctggcagtcggcttgacccgttcggctccgattactctt
ttgctgcgggaagacttaccgcggttgttgccgccggatcgccggcctttgccgccagtg
gatagctcgcggaaaaagtcgggcggcggtcgacccgttcccgtggcgccggaaacggcg
atcggcgggccgcctgcgatggagcaggtctcgctgtcggccgagtgcgccggggtgcgt
ttgcgggcgaacgcgaccgatgtgctggcggcgctcgaccagcggggggccctgtttttc
caggagatttccgccatcacggggctgctggcggcgcacctggaagaagcgttgcgggag
ttggcggcctggggactggtgacgtccgacggctttggggcggtgcgttcgatcgttgcg
ccgccgcgatcaggtcgaaatgggggaagaaagttccaggcggcttcggcgccgatgggg
cgctggtcccgtttcccggggatgctgccgaccgtcgagaacgacgcccatatcgagcag
tggtgctggcagctgctggcccgatatggcgtggtctttcgtgatctgctggcccgcgaa
tcgacggcgccggcctggtgggaacttgcccgcaagtaccgcacgctggagctgcggggg
aagatccgcggcgggcgttttgtcgccggggtcggcggcgagcagttcgccaccgaggca
gccgtcaaacatttacgcgccttgcgtgaagggccgaccgatgaacggtggtgcgttatc
tcggctgcggacccgttgaacctggcgggcgtggtcggtcatggtgaacgggtcacggcc
aaccacaaaaacgccctgatcgtgcagaacggcgaatttattgccgtcctgcaggcggat
gagcagcagttctttcgcgaaccgccgccgccggtcaaggcggcgatgggcaaggcgctg
gcgatgggccgccggatcatcgacgaatgccccacgccggcggcgcggctcgcctggagt
gcgtcgccgcgctaa

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