Lignipirellula cremea: Pla8534_50900
Help
Entry
Pla8534_50900 CDS
T06949
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
lcre
Lignipirellula cremea
Pathway
lcre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pla8534_50900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcre03019
]
Pla8534_50900
03009 Ribosome biogenesis [BR:
lcre03009
]
Pla8534_50900
Enzymes [BR:
lcre01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Pla8534_50900
Messenger RNA biogenesis [BR:
lcre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Pla8534_50900
Ribosome biogenesis [BR:
lcre03009
]
Prokaryotic type
rRNA processing factors
Pla8534_50900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
QDU97245
UniProt:
A0A518DZK6
LinkDB
All DBs
Position
complement(6829162..6830859)
Genome browser
AA seq
565 aa
AA seq
DB search
MSFMNNPNKKSHWSFLADVLGASSSASKPAEPAPAETVEEEPVAALAPTAEEASEAVEPA
EEPVAEVEEAVAEPAAEPAPVDPKRSHWGAVLGDLGLDTDLPPSPQPAAPAAAAPSAPPS
KRTAPTPPARTSNVPFGAGLVTPEPKAAEPVAETPKAAPAIKSPAPVVAEQTPVASSPAA
PAASAPDLDDDPLAGFPTSLFGKPRSAAPAKTPAASKPTPPAAPAEVAPASTTPTAPAAE
SKGRRSGFGGAILGDDEPLPAASRTPVESVSNDDEDSDEVAVQDRSSREESEEGEGRPRR
RRRGRRGRAETSAPREPVADNDDDDQEVSSESDDAEVDDDAADIEVRSTSRRSRARTETE
GDEPRRPRRRRGRRSRSETPTDGEAARSDEDQEVASDADDDSDETERPRVAAEAGGESDD
SRRPRRRRRRGRRDRFDAIDDSDAEEARSVAVSHENVETLTEFPGAAAVAQAPAAAASSA
PSRDAKFETLDDDDDDAADEFGIVRGDDDDDDDDDAEARISHRSIPSWDDAVGVVIEANI
ESRSRPGSGGRDSRRGNGGPRRGRR
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgagctttatgaacaatcccaacaaaaagagccactggagcttcctggccgatgtttta
ggcgcgagcagttccgcgtccaagccagcggaacccgcccccgccgagacggtcgaggaa
gagcccgtcgcagcgctcgcccccacggccgaagaagccagcgaagcagtcgaacctgcc
gaggaacccgtcgctgaagtcgaagaagcggtggcagagcccgccgccgaaccggctccg
gtcgatcccaaacgcagccactggggagccgtgctgggcgacctgggcctcgacaccgat
ctgccgccgtcgccccagccggccgcacctgcggccgccgccccttcggctccgccgtcg
aaacggaccgcgccgacgccgcctgcccgcacctcgaatgttccctttggcgccgggctt
gtcacgccggaacccaaagcagccgagccggtcgccgaaacgccgaaagcagcccccgcg
attaaatcgcctgctccagtcgtcgccgaacaaacccctgtcgccagctcgcctgcagct
cccgccgccagcgcccccgatctggacgatgatccgctggccggcttcccgacttcgctc
tttggcaagccgcgttccgccgctccagccaaaacgccggccgccagcaaaccgactccg
ccggcggctcctgcggaagtcgccccggccagcaccaccccgaccgcgcctgccgccgag
agcaagggtcgtcggtccggctttggcggcgcgatcctgggcgacgacgaaccgttgccc
gccgccagccgaacgccggtcgaatccgtcagcaacgacgacgaagactccgacgaagtc
gccgtgcaggatcgctcctcgcgggaagaatccgaagaaggtgaaggccggccccgccgc
cgtcgccgcggccgtcgtggacgtgcagaaacttcggccccgcgtgagccggtcgccgat
aatgacgacgacgatcaggaagtcagcagtgaatcggacgatgccgaagtcgacgacgac
gcggccgatatcgaagtccgctcgacttcccgccgcagtcgcgcacgcacggaaaccgaa
ggggacgaaccgcgtcgtccccgccgccgacgcggccgacgcagtcgcagcgaaacgccg
accgacggcgaagccgctcgcagcgatgaagatcaggaagtcgccagcgacgccgacgat
gacagcgacgagaccgaacggccccgcgtggcggccgaagccggcggcgagtccgatgac
tcccgtcgtccccgccggcgccgtcgtcgcggacgtcgtgaccgtttcgacgccatcgac
gatagcgacgccgaagaggcccgctcggtcgccgtctcgcatgagaatgtggaaacgctg
accgaatttcccggcgctgccgccgtcgcccaggcgccggcggctgccgcgtcctccgcc
ccgtcgcgtgatgcaaagtttgaaacgctcgacgacgacgatgatgacgctgctgatgaa
tttggcatcgtccgcggcgatgacgacgatgacgatgacgacgacgctgaagcacgcatc
agccatcgttccatcccctcgtgggacgacgcggtcggcgtggtgatcgaagcgaatatt
gaatcccgcagccgtcccggcagcggcggtcgcgacagccgtcgcggcaacggcggaccg
cgtcgtggtcgtcgttaa
DBGET
integrated database retrieval system
