Lignipirellula cremea: Pla8534_66360
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Entry
Pla8534_66360 CDS
T06949
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lcre
Lignipirellula cremea
Pathway
lcre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pla8534_66360 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcre03019
]
Pla8534_66360 (deaD)
03009 Ribosome biogenesis [BR:
lcre03009
]
Pla8534_66360 (deaD)
Enzymes [BR:
lcre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Pla8534_66360 (deaD)
Messenger RNA biogenesis [BR:
lcre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pla8534_66360 (deaD)
Ribosome biogenesis [BR:
lcre03009
]
Prokaryotic type
rRNA helicases
Pla8534_66360 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cementoin
CMS1
AAA_30
P-loop_SecA
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QDU98763
UniProt:
A0A518E3Y7
LinkDB
All DBs
Position
complement(8845398..8847485)
Genome browser
AA seq
695 aa
AA seq
DB search
MISSNREDASSDFDAEVQSSTQEQACTSEQSPVNEETPVAEQSPVSEEAPVAEEAPVAEE
APVAEQSPVAEDAVAGEEPVVSKKSKKKKKAAAEKLASAEQMASADKSEDAEEENGFRTL
GLSAPLMAALDSAGYTTPTPIQAQTIPLLLEGRDVLGQAQTGTGKTAAFALPLLDRLDLS
KRNPQVLVLAPTRELAIQVAEAFEKYARSMRELNVVAIYGGQDYQVQFRQLNRGVHVVVG
TPGRVMDHMRRGSLNLDDLQCLVLDEADEMLRMGFADDVDWVLTQAPADRQMALFSATMS
PPIRKIAQQHLKNPAEITIAQRTATADTINQRYIIAAPHQKQAALSRILEAEPIDGVLVF
VKTRSTTEPLAEYLAESGLKTAALNGDVPQKQRERIVESLRSGKIDVLVATDVAARGLDV
QRISHVINYDLPYDSEAYVHRIGRTGRAGRSGEAILFVHPREARTLKRLEQATRQTIEPM
SLPSNRDINKQRVARFHERITQGLAHGELEKFQAIVEHYQRENEIPLEMIAASLAILANG
ETPLLVKEEIKQASFAHDSRPGFKNDRERPGKRDFQAERPSRGQRSMGNMDTYRIEVGRF
HQVQPGNIVGAIANETGLGSESIGKIKIFDRHSTVDLPQGLPAALFEILTNVAVGGRKLR
ISRVDGGGGRPARYQEGDQSFNKSKSKYRKKLPAK
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgatttcgtccaatcgggaagacgcgtcgagtgattttgacgcggaagttcagtcgtcc
acccaggaacaagcctgcaccagcgaacaatcgccggtcaacgaagaaacgccagtagcc
gagcaatcgccggttagcgaagaagctccggttgctgaagaagctccagttgctgaagaa
gctccggttgccgagcagtcgccggttgccgaagatgcggtcgccggcgaagaaccggtc
gtcagcaagaaatccaaaaagaagaagaaggcggctgccgaaaagttggcgtctgctgag
caaatggcgtctgccgacaagagcgaggacgccgaggaagagaacggctttcgcacgctc
ggcctgagcgctccgttaatggccgctttggatagtgcgggctacaccacgccgacgccg
atccaggcgcagacgattcctttgctgttagaaggtcgcgacgtcctgggccaggcgcaa
acgggcaccggaaaaacggccgcgtttgcgttgccgttgctggatcggctggatctgtcg
aagcgaaatccgcaggtgctggtcctggcgccgacgcgggagctggcgatccaggtggcc
gaagcgtttgaaaagtacgcccgcagcatgcgggaattgaacgtggtcgccatttacggc
ggccaggattaccaggtgcagttccgccagttgaaccgtggcgtgcacgtggtggtcggc
acgccgggtcgcgtgatggatcatatgcggcgcggttcgctgaaccttgatgatctgcag
tgcctggtgctggacgaagcggatgaaatgcttcgcatgggctttgccgacgacgtggac
tgggtgttgacccaagctcccgcggaccggcaaatggcgttgttctcggcgaccatgtcc
ccgccgatccgcaagattgcccagcagcacctgaagaatccggccgagatcacgatcgcc
cagcgcacggcgacggctgatacgatcaaccagcgatatatcatcgcggccccgcatcag
aagcaggcggccttgtcccgcattctggaagcggagccgatcgatggcgtactggtgttt
gtcaaaacgcgcagcacgacggaaccgctggccgaatacctggccgagtccggtctgaaa
acggccgcccttaacggcgatgtcccgcagaagcagcgggagcggatcgtcgagagcctg
cgctccggcaagatcgacgtgctggtggcgaccgacgtggcggcccgcggcctcgatgtg
cagcggatcagccatgtgatcaactacgacctgccgtacgacagcgaagcgtatgtgcat
cggattggccgcaccggccgcgccggacgcagcggcgaagcgattctgttcgtgcatccc
cgcgaagcacgcacgctgaaacgtctggaacaggccacccggcaaacgattgagccgatg
agcctgccttccaaccgcgatatcaacaagcagcgggtggcccgttttcacgagcggatc
acgcaaggactggcccatggcgaactggaaaaattccaggcgatcgtggagcattaccag
cgagagaatgagatcccgctggaaatgatcgccgcgtcgctggctatcctggccaacggc
gaaacccctttgctggtcaaagaagaaatcaaacaggcaagctttgcgcacgattcgcgg
ccgggcttcaagaacgaccgtgagcgaccgggcaagcgtgatttccaggccgaacgtccg
tcccgcgggcagcgcagcatgggcaacatggacacgtatcggattgaagtcggccggttt
caccaggtccagcccggcaacattgtcggcgcgatcgccaatgaaacggggctgggcagc
gagtcgatcggcaagatcaaaatcttcgatcggcacagcacggttgatctgccgcagggc
ctgcctgccgcgctgtttgagattctgacgaacgtcgcggtcggcggccgcaagctgcgg
atctcccgcgttgacggcggcggcggacgtccggcccgttaccaggaaggcgaccagtcg
ttcaacaagtccaagtccaaataccgcaagaagctcccggccaaatag
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