Lacticaseibacillus paracasei BD-II: LCBD_0281
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Entry
LCBD_0281 CDS
T01955
Name
(GenBank) DEAD_2 domain protein
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
lcs
Lacticaseibacillus paracasei BD-II
Pathway
lcs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lcs00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
LCBD_0281
09124 Replication and repair
03420 Nucleotide excision repair
LCBD_0281
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcs03021
]
LCBD_0281
03036 Chromosome and associated proteins [BR:
lcs03036
]
LCBD_0281
03400 DNA repair and recombination proteins [BR:
lcs03400
]
LCBD_0281
Enzymes [BR:
lcs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
LCBD_0281
Transcription machinery [BR:
lcs03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
LCBD_0281
Chromosome and associated proteins [BR:
lcs03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
LCBD_0281
DNA repair and recombination proteins [BR:
lcs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
LCBD_0281
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
ResIII
DEAD
DEAD_2
PDDEXK_1
Helicase_C
PhoH
Motif
Other DBs
NCBI-ProteinID:
AEA55781
LinkDB
All DBs
Position
complement(281126..283510)
Genome browser
AA seq
794 aa
AA seq
DB search
MANNRIGIREFVELTVRTGDLNPITSNSNNTAIIGSQIHRKLQAAHRESDYEKEVYLKTA
VTVNDEDYQLEGRADGVWTDDTGLTVEEIKTSARPWEEATQNTKDRYWAQARIYGHLLCE
QRHLDQATITLVYVQTSTDTVSRFSEVKSAAELADDFTDLLEEFRDWLKLRSDIIKRRNT
SIDQLDFPFPQFRAGQHELAAAVYKAIYSQARLFVQAPTGTGKTISALFPTLKAMGTGLI
QRAFYLTAKQSTRRVAEQAMALMAQAGLTAKSITLTAKDTITFADEPDDPSKNPYMLGYY
DRLKPALHDLLEHEDQLTRPVIETYARKHRLDPFEFSLDASLFCDVIICDYNYLFDPLVF
LQRFFSEKDDSNFFLIDEAHNLVSRARDMYTAAITDQDFVQLKKALTPYKGAPLTKVRRA
MTRILNTLDATTSTLLTSQPTIFQDDPLDDLTAVLFRFTEVVHDWLSDPPTPALQPAVDL
VLPVFFLANQYLRIGDFYDATFKTEVTKENGQIMVKELCLDPSQFVDEALKKGRGAVLFS
ATLSPMAYFQKLLGGIDNSLAYTLPSPFDPAKQAVIVDASVNTTYRRRTQDLPQLIASLT
TLVRTKSGNYLFFFPSYAYLKTAYEAFTAANPDLKVCAQENAMTEADRQTFLDHFQTGSE
PIIGFAVLGGIFAEGIDLKGNRLIGVAIISVGLPGINAETDQLRAYFDRANGQGFAYAYQ
LPGFNNVLQAGGRVIRGTKDVGVILLIDERFITPRYARLFPDHWTHAQVSYNPTQLAQLL
THFWEAHHENTAHA
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacaatcgcattggtattcgtgagttcgttgagttaaccgttcgcaccggcgac
ctcaatccaatcaccagcaattcaaataacaccgccatcattggtagccaaattcatcgt
aaacttcaagctgctcaccgtgagtccgattacgaaaaggaagtttacctcaaaaccgcc
gtcaccgtgaacgatgaagactatcagctcgaaggccgagcggatggtgtctggacagat
gacaccggactcacagttgaggaaatcaaaaccagtgcgcgcccatgggaagaggccaca
caaaatacaaaagaccgctattgggcgcaagcacgtatttatggccatctactttgtgaa
caacggcatttggatcaagcaacaatcacgctggtttatgtccagaccagcaccgacaca
gtcagccgtttcagtgaagtcaaaagtgccgccgagttggctgatgatttcactgattta
cttgaagaatttcgcgactggctcaaactacgtagtgatatcatcaaacgacgcaacacc
tccatcgaccagcttgattttccatttccgcaattccgagctggtcaacatgagctagcc
gccgctgtttataaggcgatctatagccaagcacgtttgtttgtgcaagctcccaccggc
actggtaaaaccatctctgcacttttcccaaccttaaaagcgatgggcacgggcttgatc
caacgagccttttacctaactgccaagcaaagcactcgacgcgtggctgaacaggcgatg
gccttgatggcgcaagcaggtttaactgccaaaagtatcactttaacggctaaagacacc
atcacatttgctgacgaacctgatgaccccagcaagaatccttacatgttaggttactat
gatcgcctaaaaccagccttacacgatctactggaacacgaggatcaactgacgcgtccc
gtcatcgagacttatgctcgcaaacataggctcgatccatttgaattttcactggatgcc
agcctattttgcgacgtcatcatctgtgattacaattatctctttgatccgctggttttt
ttgcaacgcttttttagcgaaaaagatgacagcaatttcttcctgatcgatgaagcgcac
aacttagtcagtcgcgcgcgggacatgtacaccgctgccatcacagatcaagatttcgtc
cagttaaaaaaagcgctaaccccttataaaggtgccccgttgacaaaagttcgccgcgcc
atgacacgtattttgaatacccttgatgcaacgacttcaaccttgttgacctcacaaccg
accatctttcaagatgatccgcttgatgacctcaccgcagttctttttcgcttcactgaa
gtcgttcacgattggctcagcgacccgccaacccccgcgttgcaacctgctgtcgatctc
gttttgccggtattttttctagccaatcaatatctgcgaattggcgacttctatgacgcg
acattcaaaaccgaagtcactaaagaaaacggccagattatggttaaagaactgtgtctc
gatccatcgcaatttgtggacgaagccttgaaaaaagggcgtggtgccgtcttattttcg
gcgaccttatcaccgatggcatattttcaaaagttgcttggcgggatcgacaatagtctc
gcctatacgctgccctccccatttgatcccgccaaacaagcagttattgttgacgctagc
gtcaatacgacttatcgacgacgcacgcaggatttgccgcagttgattgcgagcctgaca
acattagttcgcaccaaaagcggcaactatctcttcttttttccatcctatgcctacttg
aaaacggcctatgaagccttcactgcggcgaatcccgatctaaaggtttgcgctcaagaa
aatgccatgactgaagcggatcggcaaacatttctagatcattttcaaactggcagtgaa
ccgattatcgggtttgccgtgcttggcgggatctttgctgaaggcattgatctcaaggga
aatcgactgattggcgttgccattatctccgtggggttgccgggtatcaatgctgaaacc
gatcaactgcgggcctattttgatcgggcgaacggtcaaggattcgcatatgcctatcag
ctgccgggtttcaataacgtgttacaagcaggtggccgcgtcatccgcggtaccaaggac
gtcggagtcattctgctgattgacgaacggtttattaccccacgttatgcccgccttttt
ccagatcactggacccacgcccaagtcagctacaacccaacgcaattagctcaactcttg
acgcatttctgggaggcccatcatgaaaacacagctcacgcttga
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