Lacticaseibacillus paracasei BD-II: LCBD_0933
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Entry
LCBD_0933 CDS
T01955
Name
(GenBank) Ribosomal small subunit pseudouridine synthase A
KO
K06183
16S rRNA pseudouridine516 synthase [EC:
5.4.99.19
]
Organism
lcs
Lacticaseibacillus paracasei BD-II
Brite
KEGG Orthology (KO) [BR:
lcs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lcs03009
]
LCBD_0933
Enzymes [BR:
lcs01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.19 16S rRNA pseudouridine516 synthase
LCBD_0933
Ribosome biogenesis [BR:
lcs03009
]
Prokaryotic type
rRNA modification factors
16S rRNA modification factors
LCBD_0933
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_2
S4
Motif
Other DBs
NCBI-ProteinID:
AEA56431
UniProt:
A0A422LDK7
A0A806ERU4
LinkDB
All DBs
Position
917959..918669
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AA seq
236 aa
AA seq
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MRLDKYLSHLQFGSRKEVKALIRDKRVRVAGDLITDPGYNVLPGIAVEVNDAQADGPLEV
DYLMNKPAGVITATEDPTQSTVLDLIRPHDYRPGLYPVGRLDKDTTGLLLLTTDGNLGHA
LLSPNRHIAKTYAATLAKTLTADMKQQLETGIDLKDFTTAPAQVVVLPDTDGKRIQITIT
EGKFHQVKRMLLAVDNEVTALTRIAMGPLSLPADLAAGEYRALTDDERTDLDNITR
NT seq
711 nt
NT seq
+upstream
nt +downstream
nt
atgcgattagataaatatttgagtcatttacaatttggtagtcgaaaagaagttaaggca
cttattcgcgacaagcgggtacgtgtggccggtgatttaatcactgatcctggttacaat
gtgttgccgggtatcgcggtcgaggtgaacgatgcccaagcggatgggccgcttgaggtc
gattatttgatgaacaaaccggctggggtgattaccgcaacagaagatcctacgcaatca
acggtgctggatctgatccgaccacatgattaccgaccgggtttatatcccgtaggtcgt
ctggataaagacactactggtctgttgttacttacgaccgatggcaatttaggtcatgca
ctgctttcgcctaatcgtcatattgccaaaacctatgctgcaactttggctaagacatta
actgctgacatgaagcagcaactcgaaaccggcattgatttaaaggacttcacaaccgcc
ccggcacaagtcgttgtcttgccggataccgatggcaaacgcatccagattacaatcacg
gaaggtaagtttcatcaagtcaagcgcatgttgttggcagttgataatgaggtgacggcc
ttgacgcgaattgctatgggaccattgtcattgccagccgatttagctgctggggagtat
cgggctttaaccgatgacgaacggactgatttggataatatcactcgttga
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