Lacticaseibacillus paracasei BD-II: LCBD_1201
Help
Entry
LCBD_1201 CDS
T01955
Name
(GenBank) 23S rRNA (Uracil-5-)-methyltransferase RumA
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
lcs
Lacticaseibacillus paracasei BD-II
Brite
KEGG Orthology (KO) [BR:
lcs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lcs03009
]
LCBD_1201
Enzymes [BR:
lcs01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
LCBD_1201
Ribosome biogenesis [BR:
lcs03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LCBD_1201
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
Methyltransf_15
PrmA
Cons_hypoth95
MTS
RrnaAD
TRM5-TYW2_MTfase
Methyltransf_11
REGB_T4
Motif
Other DBs
NCBI-ProteinID:
AEA56698
UniProt:
A0AB38Q509
LinkDB
All DBs
Position
1172709..1174073
Genome browser
AA seq
454 aa
AA seq
DB search
MAQPAVTKNQDLEVSIQDLTYEGMGVAKVDGFPLFIEDALPGEKMQVHVLKTQKQYGFAK
VVKRLSDSPDRVPGADSTYIRTGIAPLSILAYPAQLQFKQKQIQELYKKAHLDIAVLPTI
GMTNPLGYRNKAQVPVRTVNGELQTGFYKKHSHDLVPIEDFLIQDPKIDQAIVVVRDLLR
KYHVPAYDERANKGVIRNIMVRRGHYTKQMMIVLVSQTWQVPHLKDIVEEITLALPEVTS
VVVNLNDKRTNVILGRKSRTIYGEDYLLDKLLGSEFQISPVSFYQVNPVQTEVLYKKAIE
AAGLTGKENVIDAYSGIGTISLTMARHAKHVYGVEVVEPAVRDARANAVRNHIDNVTFEV
GKAEEVIQRWKDNELPVDVLMVDPPRKGLDKSFIDAVGYMKPPKIVYVSCNPATLARDLQ
LLAAFGYTAKETQPVDMFPQTQHIESITALALAK
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
ttggcccaaccagctgtaaccaagaaccaagatctggaagttagcattcaagatctcact
tatgaagggatgggcgttgccaaagtcgacggctttccgcttttcattgaagatgccctg
cctggcgaaaaaatgcaggtgcatgtcctcaaaacgcagaagcaatatggctttgccaaa
gttgtcaaacgattgagcgactcaccggatcgtgttcccggtgcagatagcacttatatc
cgcacggggattgcgccactgtcgatcttggcatatccggcacaattgcaatttaagcag
aaacaaattcaagaactttataaaaaagcgcatcttgatattgcggtgctgccgaccatc
gggatgacgaatcctttaggctatcgcaacaaggcgcaagtaccggttcgtaccgtgaat
ggcgaactgcaaactggcttttataaaaaacacagccacgacctcgtaccaattgaagac
tttctgattcaagatccgaaaattgaccaagccattgtggtggtgcgtgatcttttacga
aaataccatgtgccagcttatgatgaacgcgctaataaaggcgttattcgtaacatcatg
gtgcgccggggccattatacgaagcagatgatgattgtcttggtgtcacaaacttggcaa
gtgccgcatctcaaagatattgtcgaagagatcaccttagcattaccagaagtaacgagt
gtggttgtgaacttgaatgacaaacgaaccaacgtcattctaggccgcaagtcacgaacc
atttacggcgaggactatttgctggataagctgctaggcagtgaattccagatctcgcca
gtcagtttttatcaggttaatccggttcagactgaggtgctttacaaaaaggccattgag
gctgctggtctgactggtaaggaaaatgtgatcgatgcttattcaggtatcgggacgatt
tccttgacgatggcacgtcatgccaaacatgtttacggcgtcgaagtggttgaacctgct
gtgcgcgatgcacgggcaaacgcggtgcgcaatcacatcgataatgtcacctttgaagtc
ggcaaggcggaggaggtcatccaacgctggaaagacaacgaactgccagtggatgtgctc
atggtcgatccgccgcgcaaaggactggataaaagtttcatcgacgctgtcggttatatg
aagccgccaaagatcgtctatgtgtcctgcaaccccgcgactttggcaagagatttgcag
ctgctagccgcctttggctacacagcaaaggaaacccagccagtggacatgttcccgcag
acgcagcatattgagagtattacggctttggcgttggcgaagtaa
DBGET
integrated database retrieval system
