Lacticaseibacillus paracasei BD-II: LCBD_1575
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Entry
LCBD_1575 CDS
T01955
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lcs
Lacticaseibacillus paracasei BD-II
Pathway
lcs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LCBD_1575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcs03019
]
LCBD_1575
03400 DNA repair and recombination proteins [BR:
lcs03400
]
LCBD_1575
Enzymes [BR:
lcs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LCBD_1575
Messenger RNA biogenesis [BR:
lcs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LCBD_1575
DNA repair and recombination proteins [BR:
lcs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LCBD_1575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
YBR126W-A
DUF7089
Motif
Other DBs
NCBI-ProteinID:
AEA57072
UniProt:
K0MVF1
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All DBs
Position
1522111..1523520
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AA seq
469 aa
AA seq
DB search
MAQLEAQLQQHFGFQEFRPGQKALIQSVLDGHDTLGILPTGSGKSLCYQLPTLISNKPSL
IVEPLIALMNDQVGRLQAAGEKRVIALSAQMPPVAFTQILKRLASYHYIFVSPEILQRAD
VLMALKRLALGLFVVDEAHCISQWGPDFRPAYLQLGQVRQQLQADAILALTATAPEPVRR
DIVQHLSMQSPAILAGSVDRPNIFLGVETGLTDKEKALRLDQLLHEVVAPTIIYSATRAA
CETLAIRLQKAGHAAAFYHAGLDRHQRDLIQRQFQSDQLQIICATSAFGMGIDKANVRFV
VHTYVPESLEAYYQAIGRAGRDGKQSLAALLVTDHDVQHGAILAGMLPDAALIRLIYAHP
EAYRTFDDPQINLIEAYVDAGFSVEATQQQLQHRLTEKQASFAAMAAFVNESECRRAVLL
QHFDSPIEPHTALCCGEITTTILRQLQHEVPQEQPKLASWQAVFHQIFR
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
gtggcacaacttgaagcacaacttcaacaacattttggctttcaagaatttcgacctggg
caaaaggctttgatccaatcggtgttggatggacatgacacgctgggaattttacctact
ggcagcgggaaatcactctgttatcaattaccgactttgatcagtaacaagccaagttta
attgttgaaccgctcattgccttgatgaatgatcaagttggtcgtttgcaagcagctgga
gaaaaacgggtcattgccttgtcagcgcaaatgccaccggttgcttttacccaaattctc
aaacgattggcgagttaccactatatttttgtctcaccagaaattttacaacgcgctgat
gtgctcatggcgctcaaacgactggccctaggcttatttgtggtagatgaagcgcattgt
atctcacagtgggggccagattttcgacctgcttatttgcagctgggacaagttcgccaa
caattgcaagcagatgcgattcttgccttaaccgcaaccgcaccggagcccgttcgccgt
gacattgtccaacatctaagcatgcaatcgccagcaattttggctgggtcagtcgatcga
ccaaatattttccttggcgttgagaccggcttaacagataaggaaaaggctttaagactg
gatcagttattgcacgaggtggtggcgccaacgatcatttatagtgctacccgagccgcg
tgtgagacgttagcgatacgattgcaaaaagccggccatgctgcggccttttatcatgct
gggttggatcggcaccaacgcgatctaatccagcgacagtttcaatcggatcagttgcag
attatctgtgcgacgagtgcgtttggcatggggatcgataaggcaaatgtacggttcgtc
gtgcatacctatgtgccggaatcgcttgaagcttattatcaggcaatcggacgagccggc
cgtgatggcaagcagagtctagcggcgcttttggtgaccgatcatgatgttcagcacggc
gctattttggcggggatgttgccagatgcggcattgattcggctcatctatgcgcatcct
gaggcgtatcgcacttttgacgatccgcagatcaacctgatcgaagcgtatgtagacgct
ggcttttcggtagaggctacgcagcagcaattacagcacagactaactgagaaacaggct
agtttcgcagcgatggcggcttttgttaatgaatcagaatgccgtcgtgctgttctgctg
caacattttgattcgccaattgaaccgcatacggctttgtgctgtggcgagatcaccact
acgatattgcgccaactacagcatgaagtgccacaagaacaaccaaaattagcttcttgg
caggcagtatttcaccaaatctttagataa
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