Lacticaseibacillus paracasei BD-II: LCBD_1723
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Entry
LCBD_1723 CDS
T01955
Name
(GenBank) Probable endonuclease 4
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
lcs
Lacticaseibacillus paracasei BD-II
Pathway
lcs03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lcs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LCBD_1723
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcs03400
]
LCBD_1723
Enzymes [BR:
lcs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
LCBD_1723
DNA repair and recombination proteins [BR:
lcs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
LCBD_1723
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
Motif
Other DBs
NCBI-ProteinID:
AEA57219
LinkDB
All DBs
Position
complement(1676416..1677279)
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AA seq
287 aa
AA seq
DB search
MKGSEMLLGAVEEAASYTANTLQFYTGAPQNTRRKPTSEMMIPEGLAAMTKDGISHTVIH
APYIVNLGNTKKSENFTFAVQFMREEVARADALHAYTMPFHPGAHVGAGPEAAIKQIIKG
LNEIIDPNQKVTIALETMAGKGTEIGRSFDELAAIIDGVTHNEKLRVTFDTCHTNDAGYD
IKNDFDGVLNEFDHIIGLDRLSVIHVNDSKNPQGSHKDRHANIGFGTIGFDALNKIAHHP
ALAELPKILETPYVGPDKKHQVPPYGAEIKWLKTGDFQPDELRHLMV
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgaaagggtcagaaatgttgcttggtgccgttgaagaagccgccagttatacggctaac
acgcttcaattctatacgggggcaccgcaaaacacgcggcgtaaaccaactagcgaaatg
atgattcctgaagggctagcagcgatgacgaaagacggcattagtcataccgtgattcat
gccccgtatatcgtcaatctcggcaataccaagaaatcggaaaactttacatttgcggtg
cagttcatgcgagaagaagtcgctcgagcagatgctcttcatgcctataccatgcctttt
catcccggtgcgcatgtcggtgctggtccggaagcagcgattaaacaaattattaaagga
ctcaatgagatcattgatcctaatcaaaaagtgaccattgctttggaaacaatggctggc
aaaggcacggagatcgggcgctcttttgatgaattagctgccattattgatggtgtgaca
cataacgaaaagcttcgggtaacctttgatacctgtcataccaatgatgctggctatgat
atcaaaaacgactttgacggtgttctcaacgagtttgatcacatcattggccttgatcga
ctcagtgtgattcatgtgaatgactcgaaaaatccccaaggcagtcataaagatcggcat
gccaacattggctttggcacgatcgggtttgacgccttaaacaagatcgctcatcaccct
gccttggccgaattacccaagatactcgaaaccccgtatgttggtcctgacaaaaaacat
caggtaccgccatacggggcagagatcaaatggctaaaaacaggggactttcagcccgat
gagttacgccacttgatggtttaa
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