Lacticaseibacillus paracasei BD-II: LCBD_1838
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Entry
LCBD_1838 CDS
T01955
Name
(GenBank) Geranylgeranyl diphosphate synthase
KO
K13789
geranylgeranyl diphosphate synthase, type II [EC:
2.5.1.1
2.5.1.10
2.5.1.29
]
Organism
lcs
Lacticaseibacillus paracasei BD-II
Pathway
lcs00900
Terpenoid backbone biosynthesis
lcs01100
Metabolic pathways
lcs01110
Biosynthesis of secondary metabolites
Module
lcs_M00364
C10-C20 isoprenoid biosynthesis, bacteria
Brite
KEGG Orthology (KO) [BR:
lcs00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
LCBD_1838
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
lcs01006
]
LCBD_1838
Enzymes [BR:
lcs01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
LCBD_1838
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
LCBD_1838
2.5.1.29 geranylgeranyl diphosphate synthase
LCBD_1838
Prenyltransferases [BR:
lcs01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
LCBD_1838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
Motif
Other DBs
NCBI-ProteinID:
AEA57334
UniProt:
A0A806EZV2
LinkDB
All DBs
Position
complement(1789192..1790043)
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AA seq
283 aa
AA seq
DB search
MSPMLAGWRTAVEQTLDEQLAAVANPHLRAAMVYSVEAGGKRLRPLLLLSVVAMYDGVIA
DALPAAAALEYVHTYSLIHDDLPAMDDDDLRRGKPTNHKQFGEALAILAGDALLTDAFAI
LSRQYREKGAACVQILAEAAGSNGMVGGQVLDMDGENEQYHLETLKRMHEAKTGALIQAA
IAMGGLFVTIPETDQTALADFSAAFGLGFQIKDDINDVTKTTAELGKTADKDVIEHKNTF
PELLGLDGAIQALQVEIAKAETALNELTVDAAPLAEILAVLKA
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atgagccctatgttagcaggatggcgcacagccgttgaacagacgttggacgagcaatta
gctgctgttgctaacccgcatttgcgagcggcaatggtttattccgtagaggcaggtggc
aagcgcctgcgaccattgttgttgttgagtgtcgtggcgatgtatgacggtgtgattgct
gatgcactgccggctgctgctgctttggaatatgtgcatacttattcattgattcacgat
gatctgccggcaatggacgacgatgatctgcgtcgtgggaagccgaccaatcataagcag
tttggcgaagccttagcgattttggctggcgatgccttgctgaccgatgcgtttgctatt
ttaagccgccagtaccgtgaaaaaggcgccgcatgtgtgcagattctggccgaagccgct
ggcagcaatggtatggttggtggccaagtgctcgatatggacggtgaaaacgagcaatac
catctcgaaactttaaaacgcatgcatgaagctaagactggcgccttgatccaagctgca
atcgcgatgggcgggctgtttgtgaccattccggagactgaccaaacagcactggctgat
ttttcggccgcttttggcttaggatttcaaattaaagatgatattaacgatgtgaccaaa
acaacggctgaactaggaaaaacggctgacaaagatgtcattgagcataagaacactttt
cccgagttattggggttggacggtgctatccaagctttgcaggtagaaattgcaaaagca
gagacagcgttaaatgaattgacagttgacgcggcgccattggctgagattttggcggtg
ttaaaagcatga
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