Lacticaseibacillus paracasei BD-II: LCBD_1905
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Entry
LCBD_1905 CDS
T01955
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
lcs
Lacticaseibacillus paracasei BD-II
Pathway
lcs03030
DNA replication
lcs03410
Base excision repair
lcs03420
Nucleotide excision repair
lcs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lcs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LCBD_1905
03410 Base excision repair
LCBD_1905
03420 Nucleotide excision repair
LCBD_1905
03440 Homologous recombination
LCBD_1905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lcs03032
]
LCBD_1905
03400 DNA repair and recombination proteins [BR:
lcs03400
]
LCBD_1905
Enzymes [BR:
lcs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LCBD_1905
DNA replication proteins [BR:
lcs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LCBD_1905
DNA repair and recombination proteins [BR:
lcs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
LCBD_1905
NER (nucleotide excision repair)
GGR (global genome repair) factors
LCBD_1905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_polI_exo1
5_3_exonuc
Spectrin_Dys-1
HHH_2
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AEA57401
UniProt:
A0A806EUF8
LinkDB
All DBs
Position
complement(1855903..1858548)
Genome browser
AA seq
881 aa
AA seq
DB search
MASKTKLLLVDGNSVAFRAFFALYNQLDRFTNQDGLHTNAIYAFNNMLEIVLKAVQPDAA
LVAFDAGKTTFRTAKYADYKSGRAKTPSELLEQLPYIKELLDDMGIAHYELKDYEADDII
GTMDKRADEAGWETTIVTGDRDLTQLTTDRTTVQVTVKGVNELEAYTPAHVKEKLGITPA
QIIDLKGLMGDTSDNYPGVTKVGEKTALKLLNQYGSMENLYANVDDMKKSKLKENLINDK
DSAFLSKQLATIDRDAPLTVDLADVTYAGPDLDKLRDFYTKMNMNSLLKKIGGSVAKPVQ
AVHFSVLDEQSILALTKLTEPLTFEIEMLEDNYHVAEQIGFFIGTKEETYVSTDITLLTL
PAVKRWLEDAKRDLTVFDGKRNIVAANRLGVKLPDIAFDVLLASYLINPDENSNDLGKIA
EDHDYHDLPRDEDIYGKGAKRQVPEDDKLFGQFARKSNALFALRPDLTGDLEKQAQTDLF
TDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEEKIYAEAGVKFNLNSPKQL
GEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKA
QLPDHKIHTRYLQTLTQTGRLSSVDPNMQNIPARDEGKIIRKAFVPSHEGWQIFSSDYSQ
IELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQAKATNFGIVYG
ISDYGLSQNIGISRKQAKAFIDGYFDQYPKVHDYMDAMVKKAREDGYVETLFHRRRYLPQ
IHSRNFNLRKFAERTAMNTPIQGSAADIIKVAMIRMQKALDEAGLQAKMLLQVHDELIFE
APEEEIAQLSELVPKVMDSAVHLDVPLKVESHYGPTWFDAK
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcaaaacaaaattattattagtcgatggtaactcagtcgcatttcgtgcattt
tttgctttatataatcaattagaccgttttacgaaccaagatggcttgcacaccaacgcc
atttatgcgtttaacaacatgctcgagattgttttaaaggcagtccaaccagatgccgct
ttagtagcatttgatgcaggcaagacgacttttcgcacagccaaatatgctgattacaaa
agtggtcgcgccaagacaccgagcgaattgctggaacaattgccttatatcaaggaattg
ttggatgacatgggcatcgcgcattatgaattaaaggattacgaagccgatgacattatc
ggcacaatggataagcgtgcggatgaggccggctgggaaacgacgattgtcactggtgat
cgcgatttgacgcagctgacgaccgatcggaccacagttcaagtgacagtgaagggtgtc
aatgagcttgaagcttacaccccagcacatgtcaaagaaaagcttggcatcacaccggct
caaattattgatctcaaaggtttgatgggtgatacctcggacaactatcctggggtgacc
aaggtcggtgaaaaaacagctctgaaattgctcaatcaatacggaagcatggaaaacctc
tatgctaatgtggatgacatgaaaaagagcaaacttaaagagaatttgattaacgataaa
gatagcgctttcttaagcaaacagttggcaacgatcgatcgcgatgcaccgcttactgtg
gacttagcggatgtgacatatgctggaccggatttagacaaactccgggacttctataca
aaaatgaatatgaattcgttgctcaaaaaaatcggtggtagtgtcgctaaacctgttcag
gcggttcatttttccgtgctggatgagcaatcgattcttgcactcaccaagctgaccgaa
cctctgacttttgagattgaaatgctcgaggataattatcatgtggccgaacaaatcggt
ttctttattggcactaaggaagaaacttacgtgagtaccgatatcaccttgctgacgctg
ccagcggttaaacggtggctggaagatgccaaacgagatctgacagtttttgatggcaaa
cgaaacatcgtcgccgctaatcgactcggcgtgaaattaccggatatcgcttttgacgtg
ttattagcgtcctatttgattaatcctgacgaaaacagcaatgatttgggtaaaatcgct
gaagatcacgattatcatgacttgccgcgtgatgaggatatttatggcaaaggcgccaaa
cggcaagtgccagaagacgataagctgtttggccagtttgctcgcaagtctaatgctttg
ttcgcattgcggcctgatttgactggcgatttggaaaagcaggcccaaacagacttattc
actgatatggaaatgccgctttctcgggttttggcagaaatggaaattcaagggattacc
ctaaatgctaaaacgctgaaggctatgggcactgaattctcacaaagcatcaagattttg
gaagagaaaatctatgcagaagctggcgtgaagttcaatttgaactcaccaaagcagctc
ggcgaaattctttttgaaaaattgaatctgcctgtgatcaagaaaacgaagaccggttac
tcgacaagcgttgacgtgttgaacgaattgaaatcggcaagtccgattgtgcaggacatt
ttggattatcgcggctgggcgaaattaaattcgacttatgttgtcggcttgttgaaggcg
caattgcctgatcataagattcatacccgctatttgcagactttgacgcaaactggccga
ctgagctcagttgatcctaacatgcagaatattcctgctcgtgatgaaggtaagattatt
cgcaaggcctttgtaccgtcacatgaaggttggcaaatttttagttctgactattcccaa
atcgagttgcgggtgttgtcgcatatttccggggatgagaatatgcaggaggcgtttaaa
catggcgtcgacattcacgccaacactgcgatgaagatttttggcctgagttcgccagat
caagtcacacctgatatgcggcggcaagccaaggcaactaacttcggtattgtgtatggc
attagtgactatggtctatcccaaaacattggcatttcccgtaaacaggcaaaagcgttc
attgatggttattttgatcaatatcctaaggttcatgattatatggatgcgatggtcaag
aaggcgcgtgaagacggctatgtcgaaaccctgttccatcggcggcgctatctgccacaa
attcactcacgcaactttaatctgcgtaagtttgccgagcggaccgctatgaatacgccg
attcagggtagcgctgcggatattatcaaggtagccatgattcgcatgcaaaaggccttg
gatgaggccggtttgcaagctaaaatgcttctacaggttcacgatgaactcatcttcgag
gcacctgaagaagaaattgcccagcttagcgagctcgtgccaaaagtcatggactcagca
gttcaccttgatgtgccattaaaggttgaaagtcattatggaccaacttggttcgacgct
aaataa
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