Lacticaseibacillus paracasei BD-II: LCBD_2656
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Entry
LCBD_2656 CDS
T01955
Name
(GenBank) tRNA pseudouridine synthase A 1
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
lcs
Lacticaseibacillus paracasei BD-II
Brite
KEGG Orthology (KO) [BR:
lcs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lcs03016
]
LCBD_2656
Enzymes [BR:
lcs01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
LCBD_2656
Transfer RNA biogenesis [BR:
lcs03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
LCBD_2656
Prokaryotic type
LCBD_2656
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
DUF2344
Pus10_C
Motif
Other DBs
NCBI-ProteinID:
AEA58150
UniProt:
A0A0K1L1R2
A0A806F0W1
LinkDB
All DBs
Position
complement(2584167..2584910)
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AA seq
247 aa
AA seq
DB search
MTHYKVTLAYDGTNFAGYQVQPKQRTVQGVLQKALTKMTKGQPVHVDGSGRTDSGVHALG
QVISFDYPGNIPAESMLKAMNSLMPLDIEILKAEIVDADFHARYSAKGKRYLYRVARGYY
TNPFNRLYTGHYPYKLDVQRIEVALKDLVGTHDFTSFAASGGVIVDKVRTIYEATVREDP
VTNEIIFEFYGNGFLYNMVRILVATALEIGNGRRDVHDFQRLFAVKDRQQARGTAPASGL
YLKEVYY
NT seq
744 nt
NT seq
+upstream
nt +downstream
nt
atgacgcattacaaggtaacactggcctatgatggcaccaactttgctggctatcaggtt
caaccaaaacagcgcacagtccaaggtgtgctgcaaaaagctttaaccaaaatgacgaag
gggcagccagtgcatgtcgatggttcaggccgaactgattctggtgttcacgctttaggt
caggtgatcagttttgattacccgggaaatattccggctgagtcgatgctgaaagcgatg
aattcgttgatgccattagacatcgaaattcttaaagctgaaatcgttgatgccgatttt
catgcccgctattccgctaaaggcaaacggtatttgtaccgcgtggctcgtggttactat
acaaatccgtttaaccgcctatatactggtcattatccttacaaacttgatgtgcaacga
attgaagtggcattgaaggacctagtcggcacacacgactttacaagctttgcggccagt
ggcggcgtgattgtcgataaagttcggacgatttatgaggcaactgttcgagaagatcca
gttacaaacgaaattatttttgaattctatggcaatggctttctttacaacatggttcgg
atcctcgttgcgacagcgcttgaaattggtaatgggcggcgtgatgttcacgactttcag
cgtttgtttgcagtcaaagatcgtcaacaagcacgcggcaccgcaccagcatcagggctg
tacttgaaggaagtttattattag
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