Lacticaseibacillus paracasei BD-II: LCBD_2664
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Entry
LCBD_2664 CDS
T01955
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
lcs
Lacticaseibacillus paracasei BD-II
Pathway
lcs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lcs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LCBD_2664 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcs03021
]
LCBD_2664 (rpoA)
03400 DNA repair and recombination proteins [BR:
lcs03400
]
LCBD_2664 (rpoA)
Enzymes [BR:
lcs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LCBD_2664 (rpoA)
Transcription machinery [BR:
lcs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LCBD_2664 (rpoA)
DNA repair and recombination proteins [BR:
lcs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LCBD_2664 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_XRCC3_RpoA
HHH_5
SAM_EPH
Motif
Other DBs
NCBI-ProteinID:
AEA58158
UniProt:
A0A0K1L1R5
LinkDB
All DBs
Position
complement(2589024..2589962)
Genome browser
AA seq
312 aa
AA seq
DB search
MIEFEKPNITKVDESTNYGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAISSIQIDGVL
HEFSTIDGVLEDVTQIILNIKKLALKMNTDEDKNIEIDVNGPAKVTAADIVADPDVEVLN
PEQYICTVADGGHFHVRMTVKKGRGYVAADQNKSDDMPIGVLPIDSIFTPISRVNYQVES
TRVGRRNDFDKLTLDVWTNGSISPREAISLAAKILTEHLDIFVNLTDEAKNAEIMVEKEE
THKEKMLEMTIEELDLSVRSYNCLKRAGINTVQELTNKTEADMMKVRNLGRKSLEEVKNK
LADLGLGLRKED
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaattcgaaaagccgaacattaccaaagttgacgaaagcaccaactatggcaag
tttgtggttgaaccgttggaacgcggctacggtactactttaggtaactcgttgcggcgg
atccttctttcttcattgcctggggcagctatcagcagcatccaaatcgacggggtacta
catgagttctccacgattgacggtgtgctggaagatgtgacccagatcattttgaatatc
aaaaaattggcactcaaaatgaacactgatgaagacaagaacatcgaaattgatgtcaac
ggtccggctaaggtaactgctgctgatatcgtcgctgatcctgatgttgaggtcttaaat
cctgaacagtatatctgtactgttgcagatggcgggcacttccatgtacgtatgaccgtt
aaaaagggtcgcgggtatgtggcagctgaccaaaacaagtctgatgacatgccaatcggt
gttttgccgatcgactcgattttcaccccgatcagccgggttaactatcaagttgaaagc
acccgtgttggccgtcggaatgatttcgacaagttaacgctggatgtatggactaatggc
tcaatctcaccacgagaagccatcagcttagcagcgaagatcctgacagaacacttggac
atcttcgtcaatttgacggatgaagccaagaacgctgaaatcatggttgaaaaagaagag
actcacaaggaaaagatgcttgagatgactatcgaagagcttgacttgtccgttcgttct
tacaactgcttgaagcgtgctgggatcaacacagttcaggagttaaccaacaaaacagaa
gccgatatgatgaaagtacgtaatttaggtcgtaagtcacttgaagaagttaaaaacaag
ttggcagatctcggcttaggattgcgtaaagaagactaa
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