Lacticaseibacillus paracasei BD-II: LCBD_2700
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Entry
LCBD_2700 CDS
T01955
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lcs
Lacticaseibacillus paracasei BD-II
Pathway
lcs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lcs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LCBD_2700 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcs03021
]
LCBD_2700 (rpoC)
03400 DNA repair and recombination proteins [BR:
lcs03400
]
LCBD_2700 (rpoC)
Enzymes [BR:
lcs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LCBD_2700 (rpoC)
Transcription machinery [BR:
lcs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LCBD_2700 (rpoC)
DNA repair and recombination proteins [BR:
lcs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LCBD_2700 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
DUF4090
Motif
Other DBs
NCBI-ProteinID:
AEA58194
UniProt:
A0A806F105
LinkDB
All DBs
Position
complement(2618838..2622500)
Genome browser
AA seq
1220 aa
AA seq
DB search
MIDVNKFESMQIGLASPDKIRSWSYGEVKKPETINYRTLKPERDGLFDERIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDM
SPRSLEEIIYFASYVVIDPGDTPMEKKQLLTEREYREKREEYGQTFNAKMGAEAIKELLQ
DVELDKEVAELKEDLKSAQGQKRTRAIRRLDILDAFKESGNDPAWMVMDTIPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVGPWLKFYQCGVPRE
MALELFKPFVMRELVKRDMASNIKNARRKIDRQDDDVWDVLEDVIKERPVLLNRAPTLHR
LGIQAFEPVLVDGKSIRLHPLVCEAYNADFDGDQMAIHVPLSDEAMAEARMLMLAAHHIL
APKDGKPIVTPSQDVVLGNYYLTMEQKGREGEGMIFKDTNEVLMALQNGYVHLHSRIGIA
TNSFTDKPFTDDQKQKIMVTSVGKAIFNEIMPKDFPYLNEPTQDNIVNGVPDKYFIDKGE
DINDYLEDAPLIDPFKKGFLSDIIAQVFKVYKVQRTSDLLDDMKTLGYTQSTNSGLTVGI
ADITNLKEKPEIVEAAHKKVATVSKQFRRGLITDEERHDRVIQTWNDAKDDIQQKLVDSF
DPNNPISMMSDSGARGNISNFTQLAGMRGLMAAPNGGMMEVPVISNFREGLSVMEMFMST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGLVVSAIREGNEMIEPLY
DRLVGRFTMKDVLDPKSGEVLVKRNTLMDEDTAQMIVDAGVESVTIRSVFTCNTKHGVCQ
KCYGRNMATGEQVEVGEAVGTVAAQSIGEPGTQLTMRNFHTGGVAGGEDITQGLPRVQEI
FEARNPKGEAVITEVTGEITAIDENPAEHTREITVKGETDTRTYSVPYASSVAVAEGDHI
NRGERLTGGSIDPKQLIKVRDVMATENYLLSEVQKVYRMQGVDIGDKHVEVMVRQMLRKI
RVMDPGDTNILPGTLLDIADFKEKNTQAIISGGIPATGRPVLLGITKASLETNSFLSAAS
FQETTRVLTDASIRGKNDPLIGLKENVIIGKIIPAGTGMATYRHEEPKSVGTVSDSVYSI
SDIEKQMKAKDGQQGDTDKK
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
ttgattgatgtcaataagtttgaaagtatgcaaatcggcttagcctcgccagataaaatc
cgtagctggtcctatggggaagttaaaaaacctgagaccatcaactaccggacgttaaaa
cctgagcgggacggcttgttcgatgaacgcatcttcggaccgaccaaggactgggaatgt
gcctgtggcaagtacaagcggattcgttataagggaatcgtttgtgatcgctgcggtgtt
gaagttactcgttccaaggttcgccgtgagcggatgggtcatatcgaactagccgcaccg
gttacccacatctggtacttcaagggcatcccaagtcggatgggtctggtactggacatg
tcaccgcggtcactcgaagagatcatttattttgcgtcctacgttgtgatcgatcctggc
gatacgccgatggagaaaaagcagctcctgaccgaacgtgaatatcgtgaaaaacgcgaa
gaatacggtcaaaccttcaatgccaagatgggtgccgaagccatcaaggaattgttgcag
gatgttgagcttgataaagaagttgccgaattaaaggaagacctgaagtcagcccaaggc
cagaagcggacccgtgcgattcgccggttggatattctggatgccttcaaggaatccggt
aatgatccagcttggatggtcatggacacgatcccagttatcccaccggatctgcggcca
atggttcaacttgaaggtggccgttttgccacttccgatctgaacgacttgtatcgacgg
gttatcaaccgaaataatcggttgaagcgcctgcttgatctcaatgcgccaagtatcatt
gttcaaaacgaaaagcgtatgctgcaggaagcggttgatgctttgattgataatggtcgt
cgtggccgtccggttacggggccaggcaatcgcccgctcaagtccctgtcacacatgctg
aaagggaagcaaggccggttccgtcagaacttgcttggtaagcgtgtcgattactccggc
cgttccgttattgatgtcggcccatggctgaagttctatcaatgcggtgtaccacgtgaa
atggcattggaactgttcaagccatttgtgatgcgcgaattggttaagcgcgacatggct
agcaacatcaagaatgctcgtcgcaagattgatcggcaagatgatgatgtttgggacgtg
cttgaagatgtcatcaaggaacgtccagtgctgttgaaccgtgcacctaccttgcatcga
cttgggattcaggcatttgaacctgtccttgttgatgggaagtccatccggttgcacccg
ctggtctgcgaagcttataacgctgactttgatggtgaccagatggcgatccatgtaccg
ctatctgacgaagcgatggctgaagcacggatgctgatgttggctgcacaccatattttg
gcaccaaaagatggcaagccaatcgttacgccatcacaggacgttgtgctgggtaactac
tacctgaccatggaacaaaaaggccgcgaaggtgaaggcatgatctttaaggacaccaac
gaagtgttgatggccttgcaaaacggttatgtccacttgcacagccgcatcgggattgcg
actaattcctttacggacaagccgtttaccgatgatcagaaacaaaagatcatggtcacc
agtgttggtaaggcgatctttaacgagattatgccgaaagacttcccatatttgaatgaa
ccgacgcaggataacatcgtcaatggtgtgccggataagtatttcatcgataagggtgaa
gacatcaacgactaccttgaagatgcaccgttaatcgatccattcaagaaaggcttcctg
tctgacatcattgcgcaagtcttcaaggtctataaagttcaacggaccagtgatttgctg
gatgatatgaagactttgggctatacgcagtccactaactctggcttgactgtcgggatc
gctgacattactaacttgaaggaaaagcctgaaattgtcgaagctgcccataagaaggtt
gccactgtttccaagcagttccgtcgtgggttgattaccgacgaggaacggcatgatcgg
gttatccagacctggaatgatgccaaagatgatattcagcagaagctggttgattcgttt
gacccgaacaacccaatttcgatgatgtccgattcaggtgctcgtggtaacatttctaac
tttacacagcttgccggcatgcgtggtctgatggctgcgccaaacggtgggatgatggaa
gtgcctgttatctcgaacttccgtgagggcctgtccgtcatggaaatgttcatgtcaact
cacggtgctcgtaaagggatgaccgatacggcgctgaagacggctgattcaggttatctg
actcggcggctggttgatgttgcacaggatgtcattgttcgtgaagaggactgcggtacc
gaccgtggcttagttgtcagtgctatccgtgaaggtaatgaaatgatcgaaccgttgtat
gatcgactggttggtcgtttcaccatgaaggatgtgctggatccgaagagtggcgaagtg
ctcgtcaagcgcaataccttgatggacgaagatactgctcagatgatcgtggatgccggg
gttgaatccgtcacgatccgttcggtcttcacttgcaacaccaaacatggtgtctgccag
aagtgctacggtcgtaacatggccactggcgaacaagttgaagtcggcgaagctgtcggg
actgttgctgcgcaatctatcggtgaacctggtacccagctgaccatgcggaacttccat
actggcggtgttgccggtggcgaagatattacgcaagggctgcctcgtgttcaggaaatc
tttgaagctcgtaaccctaaaggcgaagctgtgattacggaagtgaccggtgaaattacg
gcgattgacgaaaatccagctgagcacacacgggaaatcacggtcaaaggtgaaaccgac
acccggacttacagcgtgccatatgcttccagtgtggcagttgctgaaggcgaccacatt
aatcgtggcgaacgcctgactggtggttcgattgatcctaagcaattgattaaagtgcgc
gatgtcatggccaccgaaaattacctgctttctgaagttcagaaagtttaccgtatgcaa
ggtgttgatatcggcgataagcacgttgaagtgatggtccgccagatgctgcgcaagatc
cgggtcatggatccaggcgacaccaacatcttgccaggaaccttactcgatattgctgac
tttaaggaaaagaatacgcaggcaattatcagtggcggtatccctgctactggccggcca
gttctactggggatcaccaaggcttccttggagaccaacagtttcctgtctgccgcttcc
ttccaggaaacgacacgggtattgaccgatgcctcgattcgcggcaagaacgatccgctg
atcggtttgaaggaaaatgtcatcattgggaagatcattccggctggtaccgggatggca
acgtatcgacacgaagaaccaaagagtgtcggcaccgtttccgacagtgtctattcgatt
tcagacatcgaaaagcaaatgaaagcaaaagacggccagcaaggcgatacggacaaaaag
taa
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integrated database retrieval system
