Lacticaseibacillus paracasei BD-II: LCBD_p15
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Entry
LCBD_p15 CDS
T01955
Name
(GenBank) type IV secretion system protein VirD4
Organism
lcs
Lacticaseibacillus paracasei BD-II
Pathway
lcs03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
lcs00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
LCBD_p15
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Gene cluster
GFIT
Motif
Pfam:
T4SS-DNA_transf
TraG-D_C
TrwB_AAD_bind
AAA_19
AAA_22
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
AEA58655
UniProt:
A0A806E8M4
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Position
pBD-II:complement(14698..16593)
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AA seq
631 aa
AA seq
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MDKEKAKNLVWNFGLVAIGSSAVYIVGSGLTRAAYNVQDKDAKSILDKILYVSNNLGKVS
WWPPTFNGKPFLGGLILLAVVALVVLYALTNKKNYRPGEEHGSAKWGTHKDILPFEDTKN
PDNNLIMTATEKLYLNDLDHKRPMKLQRNQFVTVIGGAGSGKTRTVVVPNLLQRSSSYVV
TDTKGQTLRWVGNFFEKSGYKIKVFDLVTRKHTDHFNVFAYINNEDDVIEVVNAIMQNTT
SPQSKSDPFFDKGEKALMQALFDYLRLESGNPDNRVVANVPNVLDLVRAATIEEDAGGNT
TPLDLIFEEFKKDFPDAFGLKQYGIFKLAPAKTAMSIVISLGVRLAPFDVPSIIDITSDD
TLELEKLGEEKRILFLILPDQSETFNFLVSLVYQTLFTTLVERADHQANGRLNETVVCWQ
DEFANSGQIPQFDKRINTLRSRGIFCVPIVQELSQLKERYPKSYQAILGASDSLLYLGGH
DSETAQYISKILGKGTIDVQRYGESKGNNGSFNQNYDKIARDLLAPDEVDRIGGDQSIYM
LRGVPPFLSQKYSLEKHPRYKELQTDHSDYVYQPQLKSENNKGGEVETEESKSESDFLAN
VSQEETKDDDVKENEQGSDILTDVNLLDTYR
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atggacaaagaaaaagcgaaaaacctagtctggaatttcggccttgtggctattggtagt
tctgcggtatatatcgttggcagtggtttaacgcgagccgcctataacgtccaggacaaa
gacgctaagtctatactcgacaaaatactgtacgtgtctaacaatcttggcaaggtttct
tggtggccgccgactttcaatggcaaaccattcctaggtggtcttattctactggcagtt
gtagcgctggtagttttatatgccttgaccaataagaaaaattatcgaccaggtgaggaa
cacgggagcgcaaaatgggggactcataaggatattctcccatttgaggataccaaaaac
ccagataacaacctgattatgacggccacggaaaagctgtatttgaatgacttggatcat
aaacggccaatgaaactgcagcgaaatcaatttgtgacggtcatcgggggtgctggttct
ggtaaaaccagaaccgttgtcgtacctaatctattgcagcgttccagctcctatgttgtt
actgataccaaaggacagacgcttagatgggtgggtaacttttttgagaagtctggctat
aagattaaggtctttgatttggtgactcgcaaacacactgatcatttcaatgtattcgct
tatatcaacaatgaggatgatgtcattgaagttgtgaatgctatcatgcaaaacacaacc
tcaccgcaaagtaaaagcgatccgttctttgataaaggcgaaaaagcgctcatgcaagcc
ttgtttgattatttacgtttagagtctggcaatcctgacaaccgtgttgttgccaacgta
cccaatgttttggacttagtcagagcagcaacaattgaggaggacgctggtgggaacaca
acgccacttgacttaatatttgaagaattcaaaaaggacttcccggatgcgtttgggctt
aaacaatatggtatcttcaaactcgcaccagccaaaacagccatgagtatcgtcatttcc
cttggtgttcgtttagcaccgtttgatgtgcctagcattattgatattaccagtgacgat
acattagaacttgaaaaattgggagaagagaaacggattctatttttgatcctacctgat
caaagtgaaacgtttaatttcttggtcagcttggtttaccaaacattgtttactactttg
gtagaacgtgctgaccatcaggccaacggccggcttaatgaaacagtcgtttgttggcag
gacgagtttgcaaacagtggacagattccacaatttgacaagcgtatcaataccttgcgt
tcacggggcattttctgtgtgccaattgtgcaggaactcagccagctcaaagaacgttat
ccaaagtcataccaggcgattctcggtgcctcggattcactgctgtaccttggcggacac
gacagtgaaaccgctcagtacatttccaagattcttggcaaaggaacgatagacgttcag
cgttatggtgaatccaaaggcaataatggctcattcaaccaaaactacgacaaaatcgcg
cgtgatttgttagcgcctgatgaagtcgatcgaattggcggcgaccagagtatttacatg
ctcagaggtgtgccgccatttttgtcgcaaaaatattcgttggaaaaacatccacggtac
aaggagcttcaaacggatcactcagactatgtatatcagcctcaacttaaaagcgagaac
aacaaaggtggtgaggtagaaacagaagaatccaaatcagagtcagatttcctggctaat
gtcagtcaagaggaaaccaaggatgatgacgtcaaggagaacgaacagggttcggatatc
ctgactgatgtcaatctattagacacatatcgataa
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