Companilactobacillus crustorum: BI355_0375
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Entry
BI355_0375 CDS
T04712
Name
(GenBank) ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lct
Companilactobacillus crustorum
Pathway
lct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BI355_0375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lct03019
]
BI355_0375
03009 Ribosome biogenesis [BR:
lct03009
]
BI355_0375
Enzymes [BR:
lct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BI355_0375
Messenger RNA biogenesis [BR:
lct03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BI355_0375
Ribosome biogenesis [BR:
lct03009
]
Prokaryotic type
rRNA helicases
BI355_0375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Helicase_RecD
CMS1
CobA_CobO_BtuR
Motif
Other DBs
NCBI-ProteinID:
APU70731
UniProt:
A0AB34A7Q4
LinkDB
All DBs
Position
411439..412983
Genome browser
AA seq
514 aa
AA seq
DB search
MKFKELDLDPRLLSAVDKAGFEETTPIQAQTIPLVMSGDDVIGQAQTGTGKTAAFGLPLL
NAVDTQSSDIQALIISPTRELAIQTQEELYRLGEEKKVKVQSVYGGSDIRRQIRALKSHP
QIIVGTPGRMLDHINRHTLKLHNVKTVVLDEADEMLDMGFVEDIESILSNVPNKHQTLLF
SATMPKPIMKIADKFMTDPKIVKIKSKELTADKIEQYFVKAREFEKFDLMTRLFDVQAPE
LALIFGRTKRRVDELTRGLQARGYNAEGIHGDLSQDKRTSVLRKFKAGKLDFLVATDVAA
RGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGHSGVSVTFVTPNEMGYLRTIENLTKK
RMEPLAPPTDKEVLKGQLESVKQEIKDTLEHDKHLDRFDSAVEELLSEYSAEDIARIFLS
DAIKDAESVPVKIAPERPLPSRKVSHSRSGHGRRGGRGNGGGHRGGGDHRRRNSDRRDGG
RNHDDRKGGKRREHDNKRNGRSKKSFKIRTNLEK
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatttaaagaattagatttagatcccagattattgagtgccgtagacaaagccggt
tttgaagaaactacacctattcaagctcaaactattccgctagttatgagtggcgatgac
gtcatcggacaagctcaaactggtacaggtaagacggcagcctttggcttaccattgcta
aatgccgttgatactcaatcaagtgatattcaagcattgattatctcaccaactagagaa
ttagctatccaaacacaagaagagttatatcgtttgggtgaggaaaagaaagttaaggtt
caaagtgtttatggtggatctgatattagacgtcagattcgtgcattgaagagccatccg
caaattattgtcggaacacctggtagaatgcttgatcatatcaaccgtcacacattgaaa
ttacataatgtgaagactgttgttcttgatgaagctgatgaaatgcttgatatgggattc
gttgaagatattgaaagtattctttctaacgttcctaacaagcatcaaacattgttgttc
tcagcaacaatgcctaagccaatcatgaagattgctgataaatttatgacagaccctaag
attgttaagatcaagtcaaaagaattaactgctgataagatcgaacaatactttgttaaa
gctagagaatttgaaaagtttgacttgatgacacgtttattcgatgttcaagctccagag
ttggctttgatttttggtcgtacaaagcgtcgtgttgatgaattaacacgtggtttacaa
gctcgtggctacaatgctgaaggtattcatggtgacttgtcacaagataaacgtactagt
gttttacgcaagtttaaagctggtaagttagacttccttgttgctactgatgtggctgcg
cgtggtttggatatttctggtgtatcacatgtttataactatgatattcctcaagatcct
gatagttatgttcaccgtattggccgtactggtcgtgccggacattctggtgtgtcagta
actttcgttacaccaaacgaaatgggttacttacgtacaattgagaatcttacaaagaaa
cgtatggaaccattagctccaccaactgataaagaagttcttaagggacaacttgaatct
gttaaacaagaaatcaaagatactttggaacatgataagcatcttgatcgtttcgattca
gctgttgaagaattactttcagaatattctgctgaagacattgctcgtattttcctaagc
gatgctatcaaagatgctgaaagtgttcctgttaagattgctcctgaaagaccacttcct
tcaagaaaagttagtcatagccgttcaggccatggccgtcgtggtggaagaggcaacggt
ggcggacatcgtggcggtggtgatcaccgtagacgtaatagtgatcgtcgcgatggtggt
cgtaaccatgatgatcgtaaaggtggcaaacgccgcgaacatgacaacaaacgtaatggt
cgtagcaaaaagtcatttaagattagaactaatctagaaaaataa
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