Lacticaseibacillus paracasei W56: BN194_03960
Help
Entry
BN194_03960 CDS
T02337
Symbol
celR
Name
(GenBank) Transcriptional regulator
KO
K19505
sigma-54 dependent transcriptional regulator, gfr operon transcriptional activator
Organism
lcw
Lacticaseibacillus paracasei W56
Brite
KEGG Orthology (KO) [BR:
lcw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcw03000
]
BN194_03960 (celR)
Transcription factors [BR:
lcw03000
]
Prokaryotic type
Helix-turn-helix
Other families
BN194_03960 (celR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA
AAA_5
PRD
EIIA-man
RuvB_N
HTH_11
AAA_22
AAA_16
TrmB
AAA_2
HTH_23
HTH_40
GerE
HTH_24
Mg_chelatase
Sigma70_r4
AAA_14
HTH_29
Sigma70_r4_2
NACHT
HTH_Mga
Motif
Other DBs
NCBI-ProteinID:
CCK21343
UniProt:
A0A422LEM4
LinkDB
All DBs
Position
384790..387528
Genome browser
AA seq
912 aa
AA seq
DB search
MSFEAVNRELREETQAISDLSDINKITTDRIAENLHLSRTTVSQYLNDILKKGDAIQIKS
RPTNFINRQIFSERFFSPKQTIYPSVASLIKEQVRQKNVFKTFIGNQESMKEIIERLITA
ENYPPNGLPVMLSGNTGVGKSYLAKLTYQYCVQEGLLKKDAPFVVLNCAQYYHNPELLSS
NLFGYAKGSFTGATADFKGMLESANGGVLFLDECHRLNPESQEKLFSFMDTGNFERMGEN
AVSRSSKVRLIFATTENLQENFLQTFLRRVPVAVTLPDLNNRSKAELKMLIFQTFIEESR
RLQRYFRVAPWIINHLFNLKYKNNIGELKTTIKLICAHAYSQDQMNSDIEISSDNIGNSL
LQRLTAVNNQEEICSEVVNFTPESRLTDFVDTTISENSRVNDLMTHLCDVEGEFQNDKLT
AAMVIEIISRESRALMDEMVHRDKRDHNESLKYLINIIQQLFDYLGSSLFVKIKGNAVIA
FASFIYLKQEVDLALTVKAEKSVHNLLELAKQNATVEYQVLKSFLELIKTKLDFRMGEVD
KLLLLGYLISLNLNYKTSNKHAIILAHGYSTASSIADVANQFLNKKIFDSYDMPLNVSIQ
QVNDYIQQYIHKNDCHKGLIILVDMGSLMVLPDSLKANINGPLLVINNVSTQLALFVGES
IEKNIAFNEIGKLMTDKLAPEYSLIYPVIKKSPMIITTCHTGIGSAKQIQSLLEHSIPTS
LHYKIEAVDLEYLKKYGDSNSVFEQYDVKAIVGTSDPHIKRVPYIALENLIAGDGTSVVK
TLFPDVKDMALLKRINNYLVENLSVERLLSAVTILDATKVISSVSDMMTELEENTGIRLT
NNQRVTLYVHVSAMIERLIRNEPPLVYKVVSSEERKQGCTKIKRALRNIESSYGIKVDQN
ELNYLYDIVFQL
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgaagctgtaaatagggaattgcgtgaagaaacacaagctattagcgactta
agcgatattaacaaaatcacaactgaccgcattgctgaaaatcttcatttgagccgcacg
acagtcagtcagtacttgaacgacattttaaaaaagggcgatgccattcaaatcaagtca
cggccaaccaacttcatcaatcggcagattttttctgaacgttttttctcgccgaaacaa
acgatatatccatcagtagcctcactaataaaagagcaggttcgccagaaaaatgttttt
aagactttcattggcaatcaagaaagtatgaaggaaatcattgagcggctcatcacagcg
gaaaattacccgccaaacgggctacctgtcatgctttcaggcaacacaggtgttgggaaa
agctatcttgccaagctcacctatcagtattgcgttcaggaaggtttgttgaagaaagat
gcaccattcgttgtcttaaattgtgcacagtattatcacaacccagagttgctctcaagc
aacttatttggatatgcgaagggcagttttacaggagctacggcagatttcaaaggaatg
ctggagtcagcaaatggcggcgttttgtttttggatgagtgtcaccgtttaaatccagaa
agtcaggaaaaactcttttcgtttatggataccggtaatttcgagcgaatgggagaaaac
gcggtgtcgcgatcaagtaaagttcgcttgatctttgccacgactgagaatctgcaagaa
aattttttgcagacatttcttcgtcgtgtaccagtcgctgtcacattgcctgatctgaat
aatcgctctaaggcagaattaaagatgttaattttccaaacattcattgaagaaagccgg
cgtttgcaacgctacttcagggttgcgccgtggatcatcaatcacctgttcaatttgaag
tataagaataatattggggaacttaaaacaacgattaaactgatttgtgcgcatgcttat
agccaagatcaaatgaatagtgacattgaaatttcgtcagataatattggtaatagtttg
ctacaacgattaacggccgtgaataaccaagaagaaatatgtagtgaagtcgttaacttt
acaccggaaagtcgcctgaccgacttcgttgatacgacgatcagtgagaattctagagtc
aatgatttgatgacgcatctttgtgacgtggagggggaatttcaaaatgataagctgacg
gcagccatggtgattgaaatcatttctcgtgaatctagagcgttaatggatgaaatggtt
catcgagataagcgtgatcacaacgaatctcttaagtacttaatcaatattattcaacag
ttgtttgattacttaggaagctcgctttttgtaaaaatcaaaggtaatgcagtgattgcc
tttgccagcttcatttatcttaagcaagaggttgatctggccttaacggtgaaagctgag
aaaagtgtccataatcttttggaacttgcgaaacaaaatgcgacggtcgagtatcaagtt
ttaaagtcttttcttgaattgatcaaaacaaagctggattttcgaatgggtgaagttgat
aaacttcttctcctaggctatctcattagtcttaacctcaattacaaaaccagcaacaag
catgcgattattctggcccatgggtactcaacagctagtagtattgcagacgttgccaat
cagtttttaaacaagaaaatttttgactcatatgatatgccattgaatgtttcgatccag
caagtgaatgattatattcaacagtatattcacaaaaatgattgccataagggtctcatt
attttggtagatatggggtcattgatggtattgcctgattcgttgaaggctaatattaac
ggaccattgctggttattaacaatgtatctacgcagctcgctctttttgtcggagaaagt
atagagaagaatatcgcatttaatgaaattggtaagttgatgactgataagcttgctcca
gaatatagtttaatctatccggtcattaagaagagtccaatgattattacgacatgtcat
actggaattggttccgcaaaacaaattcaaagtttgcttgagcatagtattccaaccagt
cttcattacaaaattgaagctgtggacttggaatatctcaaaaaatatggcgatagcaac
tctgtttttgaacagtatgatgttaaggccattgttggtacgagtgatccgcacattaaa
agggttccctatatagcacttgagaatctcatcgccggagacggtacgtctgtggttaag
acactatttccagacgtcaaagacatggcacttttgaaacgtatcaataattatcttgtc
gaaaatctttcagtggaacggcttctgtctgctgttacaatcctagatgctaccaaggtg
atcagttcggttagcgatatgatgacagagcttgaagagaatacaggaattcgtctgaca
aataatcaacgtgtgacgctttatgttcatgtaagcgctatgattgaacgactgatcaga
aatgaaccaccactggtttataaggttgttagcagcgaagaaagaaagcaaggatgtact
aaaatcaaacgggctttgagaaatattgaaagctcatatgggatcaaagtcgatcaaaat
gagttgaactatctctatgacattgtgtttcagctatag
DBGET
integrated database retrieval system
