Lacticaseibacillus paracasei W56: BN194_03970
Help
Entry
BN194_03970 CDS
T02337
Symbol
rpoN
Name
(GenBank) Sigma 54 transcription factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
lcw
Lacticaseibacillus paracasei W56
Pathway
lcw02020
Two-component system
lcw02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lcw00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
BN194_03970 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BN194_03970 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcw03021
]
BN194_03970 (rpoN)
Transcription machinery [BR:
lcw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BN194_03970 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
RepL
HTH_23
LacI
Motif
Other DBs
NCBI-ProteinID:
CCK21344
LinkDB
All DBs
Position
387570..388865
Genome browser
AA seq
431 aa
AA seq
DB search
MDQSIRLNQRQINKLVLTQGMRQSIQMLQLDAVDLDAYLKDVAESNPFIEVRSHFERAED
SLSGATFEEMSAGSSTENLFDHLLMQVQLSLAGNPLRQIVVYLINQLNNNGYLILEDRQI
VDEIGISPEKLTEAMRLLQGLDPPGVGARNLQECLSLQAHRDTGIPKGVIAILDQDFELL
VSHDMTRICEKNNLSTTELHNALDFIKSLSAAPGKVFEQPQPISYIIPDARLSVTNDGQL
KLWLTKWGRPELVFAEKTYQDLKKSADSATQQYLKEKHEEYLSLQHGLQRREETLLATVN
QIVVNQHAFLLHQAALAPLLLRDVAKALQVNESTVSRTIKGKHLQTDLGIFAFKDFFSKR
TQAVSSSAYHSVDQLKFTMMQLIQSENKMCPASDNLLVKWLYEKGFKVARRTVTKYRNEL
GLPAASARKSR
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atggatcaatctattagactcaatcaacggcaaatcaataagttggtgctaacgcaaggc
atgcgacagtcaattcagatgttgcaattagacgccgttgatttagatgcatatctcaaa
gacgttgctgaatcgaacccttttattgaagtacgctctcattttgagcgggcagaagat
tcattatctggcgcaacatttgaagaaatgtcggctgggagcagtaccgaaaatcttttt
gatcatttattaatgcaagttcaactttcactagctgggaatcctttgcgccaaatcgtc
gtttatttaatcaatcaactaaataacaatggctatctgattctggaggatagacagatc
gtggatgagatcggtatttctcccgaaaaattgaccgaagctatgcggttactgcaggga
ctagatccccccggtgttggcgcccgtaatcttcaagagtgtctatcactgcaggcccat
cgtgatactggcataccaaagggagttattgccatacttgatcaggattttgaactgcta
gtttcgcatgatatgacacgcatttgcgaaaagaacaatttgtcgacgaccgaactacac
aatgcgcttgacttcataaaatctctttcggctgctcctgggaaagtatttgagcaaccg
caaccaatttcgtatattattccagatgcaaggctgagtgttactaatgatggtcaactt
aaactatggctgacaaagtggggtcgccctgagctggtatttgcagaaaaaacttatcaa
gacctgaaaaaatcagcagattcagcgacacaacagtaccttaaagaaaagcacgaggag
tatttgtccctgcaacacggtctacaacgccgcgaggagactttacttgcgacagttaat
caaattgttgtgaaccaacatgcatttttattacatcaagcggctttggcaccgttactt
cttagagatgttgcaaaagcacttcaagtcaacgaatcgactgtgagtcgaacaattaag
gggaaacatttacagacagatcttggcatttttgcctttaaggactttttttcgaagcgt
acacaggctgtatcaagtagtgcctatcattctgttgatcagttgaaatttacaatgatg
cagttgattcagtctgaaaataaaatgtgtccagcaagtgacaaccttttagtcaaatgg
ttgtacgaaaaaggctttaaagttgctcggcgtacggtaaccaagtatcgcaatgagctc
gggcttcctgctgcttcagcgcgaaaatcgagatga
DBGET
integrated database retrieval system
