Lacticaseibacillus paracasei W56: BN194_15970
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Entry
BN194_15970 CDS
T02337
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
lcw
Lacticaseibacillus paracasei W56
Brite
KEGG Orthology (KO) [BR:
lcw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lcw03032
]
BN194_15970 (topA)
03400 DNA repair and recombination proteins [BR:
lcw03400
]
BN194_15970 (topA)
Enzymes [BR:
lcw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
BN194_15970 (topA)
DNA replication proteins [BR:
lcw03032
]
Prokaryotic type
DNA Topoisomerases
BN194_15970 (topA)
DNA repair and recombination proteins [BR:
lcw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BN194_15970 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
C1_2
Motif
Other DBs
NCBI-ProteinID:
CCK22544
LinkDB
All DBs
Position
1555195..1557279
Genome browser
AA seq
694 aa
AA seq
DB search
MADKKLVIVESPAKAKTIEKYLGRTYKVVASLGHIRDLPKSQMGVDVDNDYEPKYISIRG
KGDVIKSLKKDAKKASKIYLAADPDREGEAIAWHVSHILGLDPKAKNRVVFNEITKDAVK
NAFKTPRGIDMDLVDAQQARRILDRLVGYSISPLLWKKVKKGLSAGRVQSVALKLIIDRE
NEIKNFTPEEYWSLDAEFQKGRSKKFSASFYGLKNKKQALKNNEAVQKILGQVDKTKPFA
VTNVVKKERKRFPSPPFTTSTLQQEANRKLGFRTRKTMMLAQQLYEGINLGGKLGTVGLI
TYMRTDSTRVSNVAKTETSHYLHEKYGEAYAAVKIRQGKLQEGAQDAHEAIRPTSTLRTP
DSLTAVLDKDQMKLYRLIWSRFVASEMTPAIIDTVAVTLDQNGVTFRANGSQTKFEGFTK
LYVSSRDSDQKDNILPPLAVGDDVKMLKTDPAQHFTQPPARYSEANLVKALEENGVGRPS
TYAPTIETIQKRHYVKLNARRFEPTELGEIVNSLIVEFFPDIVNIKFTANVESELDGIET
GEADWVKVIDQFYKPFEKEVAHAETGIAKIQIKDEPAGFNCDICGAPMVIKMGRYGKFYA
CSRFPDCRNTKAIVKEIGVVCPKCHIGQVVERKSKRNRVFYGCSRYPDCDFVSWDKPVGR
DCPVCGHFLVEKKSKAGTQVVCPNNDYKEALQKA
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaagaagttagtcattgttgaatcgccagccaaagccaagactattgaaaag
tatcttggccgaacctataaagttgttgcaagtttggggcacattcgcgatctacctaag
agtcagatgggggtcgatgtcgataacgactacgagccaaagtacatttcgattcgcggc
aaaggcgatgtgattaagtcccttaaaaaagatgctaaaaaagctagcaagatttatctc
gcagccgatccggatcgtgaaggagaagccattgcatggcatgtcagtcacattttaggt
ttggatccaaaagccaaaaatcgcgtcgtttttaacgaaattacgaaagatgccgttaaa
aatgcgttcaaaacccctcgtggcattgatatggatcttgtagatgcccagcaggcacgg
cggattttggatcgactggtaggctattccatcagtcctttattatggaagaaagttaaa
aaaggcctgagtgctggccgcgttcaaagtgttgcgctaaagctgattattgatcgcgaa
aatgaaatcaaaaacttcacgccagaagaatactggtcattagatgctgagtttcagaag
ggccgtagtaaaaagttcagtgctagtttctatggcctgaagaataaaaagcaggcttta
aagaacaacgaggccgttcaaaagattttgggccaagtggacaaaactaagccgtttgct
gtgacgaatgttgttaaaaaggaacgcaaacgcttcccatccccgccgttcacaaccagt
accttgcagcaggaagctaaccgtaagttgggattccgcacccgaaagaccatgatgttg
gcccagcaactgtatgaaggaattaacttaggtggtaagttaggcaccgttgggctgatc
acgtacatgcggaccgactcgactcgcgtgtcaaatgttgccaaaactgaaaccagccat
tacctgcatgagaaatacggcgaagcttatgctgctgtcaaaattcgccaaggtaaactg
caggaaggggcacaagatgcccacgaagccattcggccaaccagcacattacggacaccg
gatagtttgacggcagttttggacaaggatcagatgaaactttatcggctgatctggagt
cggtttgttgccagtgaaatgaccccggcgattattgacactgtggccgtgacgttagac
caaaacggtgtgactttccgcgccaacggtagtcagactaagtttgaagggtttaccaag
ttgtatgtctcatcacgtgacagcgatcaaaaggacaatattttgccaccgcttgcagtt
ggtgatgatgtcaaaatgttgaagaccgatccggctcaacactttacacagccaccagcc
cgttactcggaagcaaaccttgtcaaagcgcttgaagaaaatggcgttggtcgtccgtca
acttatgcgccaactatcgaaaccattcagaaacgtcactacgtgaaactgaatgctcgt
cggtttgaaccgactgaattaggtgagatcgtcaacagcttgatcgttgaattcttcccg
gacatcgtgaatatcaagtttacggcgaacgtcgaatctgaacttgatgggattgaaacc
ggcgaggctgattgggttaaggtaattgatcagttctataagccatttgaaaaagaagtg
gctcacgccgaaactgggatcgcgaagattcaaatcaaagacgaaccagccggcttcaac
tgtgacatctgcggtgcgccgatggttatcaaaatgggtcgctatggtaagttttacgcc
tgttcccgattcccggattgccgcaacaccaaggccattgtcaaagagatcggggttgtc
tgcccgaaatgtcatatcggtcaagttgttgaacgtaagagcaagcgtaaccgcgttttt
tatggttgctcgcgttatccagactgcgactttgtctcatgggacaaaccagtcggccgc
gattgcccggtctgcggacatttcttagttgagaaaaagagcaaagctggcacccaagtt
gtctgcccaaataacgattataaagaagccttacaaaaagcataa
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