Lacticaseibacillus paracasei W56: BN194_16920
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Entry
BN194_16920 CDS
T02337
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor rpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
lcw
Lacticaseibacillus paracasei W56
Pathway
lcw02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lcw00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BN194_16920 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcw03021
]
BN194_16920 (rpoD)
Transcription machinery [BR:
lcw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BN194_16920 (rpoD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
DUF6753
Motif
Other DBs
NCBI-ProteinID:
CCK22639
LinkDB
All DBs
Position
complement(1668831..1669889)
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AA seq
352 aa
AA seq
DB search
MIKDYKKKKQITEDDLTDKLVKPFELKSGAIDDLMQKIEDNGIAIVDENGEPAAISLKKQ
KKVSKKEMSDMSAPSGVKINDPVRMYLKEIGRVSLLTADEEVALALKIEQGDQEAKQRLA
EANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWWIRQAIT
RAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMPTEKVREILKI
AQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLDTLTDREENVLR
LRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFLE
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
gtgattaaagattacaagaagaagaaacaaattactgaagatgacctgaccgacaagttg
gttaagccgtttgagctcaagagtggtgccattgacgatctgatgcaaaagatcgaggat
aatgggattgctattgttgatgaaaatggcgagccagcagcgattagcttgaagaagcaa
aagaaggtttccaagaaggaaatgagtgacatgtccgcaccttcaggggtcaaaatcaat
gaccctgtacggatgtacctgaaggaaatcggccgagtttccttgctgacagctgatgaa
gaagttgcccttgccttgaagattgaacaaggtgatcaagaagctaagcaacgtttggct
gaagctaacttgcgactggttgtttccatcgctaagcgttatgttggtcgcggcatgcaa
ttcctggatctgattcaggaagggaacatggggctgatgaaggcggtcgagaaattcgat
taccggaaaggctttaagttctcaacgtatgccacctggtggattcggcaggctattacc
cgtgccatcgctgaccaagcccggacaattcggattccagtgcatatggttgaaaccatt
aacaaattgattcggattcaacggcaactgcttcaagaccttggtcgtgaaccaacgcct
gaagaaatcggcgcggaaatggacatgccaactgaaaaggttcgcgaaatcctgaagatt
gcgcaagaacctgtttccttggaaacgccaattggtgaagaggatgattcacatcttggc
gacttcattgaagaccaagacgccaccagtcctgaagaccatgcttcctatgaactgctc
aaagaacagttggaaagtgtgctggataccttaacggatcgtgaagaaaatgttttgcgg
ttgcgttttggactcgatgatggccggacccgtaccttggaagaggtcggcaaggtcttt
ggcgtgacccgcgagcgaattcgtcaaatcgaagctaaggcattgcggaagctccgccac
ccaagccgttccaagcaacttaaggattttcttgagtaa
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