Lacticaseibacillus paracasei W56: BN194_22190
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Entry
BN194_22190 CDS
T02337
Symbol
recD
Name
(GenBank) Putative exodeoxyribonuclease V
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
lcw
Lacticaseibacillus paracasei W56
Pathway
lcw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lcw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
BN194_22190 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcw03400
]
BN194_22190 (recD)
Enzymes [BR:
lcw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
BN194_22190 (recD)
DNA repair and recombination proteins [BR:
lcw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BN194_22190 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_30
AAA_19
HHH_RecD2
UvrD_C_2
SH3_13
PIF1
AAA_11
Viral_helicase1
PhoH
AAA_22
AAA_16
AAA_25
Helicase_RecD
HHH_5
Motif
Other DBs
NCBI-ProteinID:
CCK23166
LinkDB
All DBs
Position
complement(2198853..2201327)
Genome browser
AA seq
824 aa
AA seq
DB search
MRTALKMTLTQEATITGDMGYYNRRAIITADLVYDDAGSLRYNKPSYKLARLHFGLPKEP
RRQWQLIDTLLVHQPTVRRRLHEHFADDTPILTIFSTDQVKPDSVPGIGPATIKKIATAI
RGKLEIAVLANHWGKALSSMTYEKIWLAYKDANLAMQSIDANPYLLMSVAQLDFKKVDTF
AKTRGIAANDPHRLTAGLQYIFRTAVLTQGLTYITITWFRQQAATLLAVREADLKMFADP
QEALQYGFLLNEQYGLVTSCDMFATEGSVARIIKVAQKTAEPLMAPDELDDALDQFLDRF
HLTINDQQRAAFQNVNRHGLSVLNGSAGTGKTWLTDLLVRFFNAQAKGKSVLLAPTGRAA
KVLAKYTHEPAATIHAYLHLLPGEETGQFDADADWETFGDARLIVVDESSMLTTPLAYTV
LKNVNFKKAHVLFVGDVFQLPPIGPGNFLKDCLDDEQVAATTLTRVYRQDSQSGVLALAN
RIRERLALPFGPDDDRYVSGNVALCNQRNAGRVFDAGVKAYQDALVKSGQQIDAQLLIVN
KNIGATGRLRFNAELQALVNPAKNGEPEYISSYVDPVTNQKHHLRLNDRVMILKNDKHVP
LVDPKTWERRAVLGENGLQQTDDFGTKRWRETIVANGDTGVVAHIDTKRHFVVVQIGQQY
CYYSFGSVPRDLTLAYAITVHKAQGGQADTVIAIVNGADMMLNAQSFYTALTRTQQQFIF
FGDFRVLLARTKIYPIDARHDLLGSFLSGQLTVDTFSRYTFDQVLAWLDKRHAERLSTRP
ALEAEEVKPSEQPFSVRYAEQLDILDQIVDEVAQLPARKPARDV
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atccgcacggcgcttaaaatgacgctcacccaagaggcaaccattaccggtgatatgggc
tactacaatcgccgagcgatcatcaccgctgatttggtttacgatgatgctggctcattg
cgttataacaagccgtcttacaaattggcgcggttgcattttggcttgcccaaagaaccg
cgccggcagtggcagctgattgacacgttgctggtgcatcagccgacagttcggcgccga
ttgcatgaacattttgcggatgataccccgatcttgacgattttttcaaccgatcaggta
aaaccggatagtgtcccgggcattggtcccgccacaattaagaaaatcgctaccgccatc
cgcggcaaactggaaattgccgtgttggccaatcactggggcaaggcactaagctcaatg
acttatgaaaaaatttggttggcttataaagatgccaatttggccatgcaaagtattgat
gccaatccgtacctgttgatgtcagttgcccagcttgatttcaagaaagtcgacaccttt
gctaaaacgcgtggcattgcagcgaatgatccgcatcggcttacggcaggattgcaatat
atttttcgcacggctgtactcacgcaaggattgacctatatcaccattacgtggttccgg
cagcaagctgctactttattggctgtacgcgaagccgatttgaaaatgtttgctgatccg
caagaagccttgcaatacggctttttacttaatgagcagtatggactggtgacgagttgc
gatatgtttgccacagaaggatcggtggcgcggattattaaagtcgctcaaaaaacagcc
gaaccgctgatggctccggatgagctagatgatgccctcgatcagtttctcgatcggttt
catttaaccatcaatgatcagcagcgcgccgcttttcaaaatgtgaaccgtcatggcttg
agcgttttgaacggcagtgctggcaccggtaaaacttggttgaccgatttgttggttcgg
ttttttaacgcccaagcaaaagggaaaagtgtcttgcttgcaccaactggccgcgccgcc
aaagttttggcaaagtatacgcacgagccagctgctacgattcatgcttatctgcatcta
ctgccaggtgaagaaaccggccagtttgacgcggatgccgactgggaaacctttggcgat
gcgcgactcattgtggtggatgaaagctcaatgctgacaacgccgctagcctacacggtt
ttgaagaacgtcaatttcaaaaaggcgcatgtgctgtttgtcggtgatgttttccaactg
ccgcccatcggtcctggcaactttctaaaagattgtctagacgatgaacaggtggcggcg
acaacactgacccgcgtttatcggcaagatagccagtccggcgtgttagcactagctaat
cgcattcgtgagcggttagcgctgccttttggaccagacgatgatcgctatgtcagcggc
aatgtggcgctgtgtaaccaacgcaatgctggccgggtgtttgatgctggggtgaaggcg
tatcaggatgcgctggtcaaaagtggtcagcagattgatgcgcaattgttgatcgtgaat
aaaaacatcggcgcaactggccgcttgcgatttaacgcggagttgcaagcgttggtcaac
ccggctaaaaatggcgaaccggagtatatcagcagttacgtggacccggtcactaatcaa
aaacatcacttgcgcctcaatgatcgggtcatgattttgaaaaacgacaaacatgtcccg
cttgttgatccgaaaacatgggaacggcgtgcggtgctgggcgaaaatggcttgcaacag
accgatgattttggcactaaacgttggcgtgagacaattgtggcaaacggcgacacaggg
gtggtagcccatattgataccaaacgccattttgttgtggtccaaatcggccagcaatat
tgttactacagttttggcagcgtgccgcgcgatttgacgctggcttatgcgattacggtg
cataaggcccaaggtgggcaggcagataccgttattgccattgtcaacggcgccgacatg
atgctcaatgcccaaagcttttatacggcgttgacgcgcacccagcagcaattcatcttt
tttggtgattttcgggtgctcttagcccgcaccaaaatctatcccatcgacgcccgccat
gatttgctcggcagttttctatccggccaactgacagtcgatacgttcagccgctatacc
tttgatcaggtcttggcctggctggataagcggcacgctgaacgcttatccacgcgaccc
gcgctggaagcagaggaagtcaaaccaagcgagcagccattttccgttcgttatgcggaa
caactggacatcttggatcagattgtcgatgaggttgctcaattgccggctagaaaacct
gctcgggatgtttga
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