Lacticaseibacillus paracasei W56: BN194_26540
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Entry
BN194_26540 CDS
T02337
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lcw
Lacticaseibacillus paracasei W56
Pathway
lcw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lcw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BN194_26540 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcw03400
]
BN194_26540 (mfd)
Enzymes [BR:
lcw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BN194_26540 (mfd)
DNA repair and recombination proteins [BR:
lcw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BN194_26540 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
DUF7398
Motif
Other DBs
NCBI-ProteinID:
CCK23601
LinkDB
All DBs
Position
complement(2659075..2662599)
Genome browser
AA seq
1174 aa
AA seq
DB search
MNLIDMVQADPALSALWPKLKTGRHLVTGLSGSAKTVFFGALLQQRPQQILIVENNRFHA
DELAADLSSLLGDAVVYDFPVEDVLAAEVAVSSPETRNDRINALTFIQSGKPGIIVTSLA
GYKRLLPSPADWTASELAIDMTSELDPQTVAKQLVAMGYRRDSLVSAPGQFAIRGGIIDV
YPLNQDDPIRIELFDTEIDSIRSFDIATQRSLQKLQQITIAPATDMVATDQVLAAAGERI
TKQANAYKAKVKNAAAKQAVTDGLLTTGQQLSAHERPENLALYAAELYPEQQRISDYLQP
DALVAFDDYSRLLDSDTTLVQDTAEWYSQLQEEGRLLPNTPNLTIQELAQQDKRPRLYLS
LFQKGMGQLRLDSLTNIPSRNVQQFFSQMPLLKTETDRWVKQQQTVVFLITDKNRLEKLS
ETLSDFEISNVMTAPTKLLPSQVQLTEGSLKNGFELPDLKLVVVTEHELFNARQRRHARH
QTLANTERLRSYNELKPGDYVVHVNHGIGQYTGMETLEVDGVHRDYITIVYRNNDKLFIP
VDQLNLVQKYVSADGKTPSVNKLGGAEWQKTKRKVAARIEDIADELIDLYAKREAEKGFA
FGPDDDLQHKFEAEFPYPETPDQLRSAKEIKHDMEKPKPMDRLLVGDVGFGKTEVALRAA
FKAIDYGKQAAILVPTTILAQQHFDTMKERFADFPIKVGLLSRFQTAHQNKETIKGLKNG
TIDIVVGTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRT
LNMSMLGVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDM
ERTVSQLEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANT
LIIENADHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKNFTELGSG
FKIAMRDLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNKRRGIKSAEKTDAEIDLG
LEAYLPTDYVADSRQKIELYKRIREADSDEAETEISEDLIDRFGDYPQPVTNLLAIAHLK
RFADLAWVNHVTKAGQKLTVVLSPQATAKAQGEPIFKALSATTLKAQVAITDGKLTVTLA
LPKDMKTATWLDQLTGFLQGLLTVVNPQPEKKSA
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgaatttgatcgacatggtgcaggcagatccagcattgtcggcattatggccgaagctg
aaaacgggtcgccatttggtgacgggactgtcgggctcagccaagacggtcttttttggc
gcactattgcaacagcgaccgcagcagattctaattgttgaaaacaatcgctttcatgcc
gatgaattagctgctgatttaagcagtttgctcggagatgcagtggtttacgattttcca
gttgaggatgtgttggcagctgaagtcgcggttagttcgccagagacgcgtaacgatcgt
attaatgctttgacgtttattcaaagcggcaaacctgggatcatcgtaaccagtctggcc
ggttataagcggcttttgccgtcaccagccgattggacagctagtgaattggccattgat
atgacttccgagcttgatccgcaaaccgttgccaaacagctggtcgccatgggctatcga
cgtgattcgttagtcagcgcgccgggacagtttgccattcgcggcggcatcattgacgtc
tatccgttgaatcaagacgatccgattcgaattgaattgttcgatactgaaatcgattcc
atccgcagctttgacattgccacccaacgtagtctgcaaaaacttcagcagatcacgatt
gcgccggcaaccgacatggtggcgactgatcaggttttggccgctgctggcgagcgcatt
accaagcaagctaatgcctacaaggcaaaagtgaaaaatgccgccgctaagcaggccgtt
acagatggtttattgacgactggccagcagctatcggcacacgagcgtcctgaaaatcta
gctttatatgcggccgaactatacccagagcagcaacgcatcagtgactatttgcaacca
gatgcactggtagcattcgatgattacagtcgtttgctagatagcgatacaaccttggtg
caggatacggcagaatggtactcacagttgcaagaagaaggccgtctgctacctaacacg
ccgaacctgacgattcaggaacttgcacagcaagataagcgcccgcggctttaccttagc
ctttttcaaaaaggcatggggcagttgcgacttgacagcttgaccaatattcccagccgt
aacgtgcagcaatttttcagtcagatgccgttactcaaaacagaaaccgatcgctgggta
aagcagcagcaaaccgtggtgttcttgatcacagataaaaatcggctggaaaagctgagc
gaaacgttgtcagattttgagattagcaatgtcatgacagccccgactaagctgttgcca
agccaggtgcaattgacagaaggcagcctgaaaaatggcttcgagctgcccgacttgaaa
ttagtcgttgtgaccgagcacgagttattcaatgctcgccaacgtcgtcacgcacggcac
caaacactggcgaatacagagcgattgcgaagctataacgaactcaagcctggtgactac
gtggtgcatgttaatcacgggatcggtcaatacaccgggatggagacattagaagttgac
ggtgtgcatcgtgattacattacgattgtttaccgcaacaacgataagctgtttattcca
gttgaccaactgaatctagtccaaaaatacgtttccgcagatggcaaaacgccaagcgtc
aataaacttggtggtgctgagtggcagaaaactaaacgcaaagtagctgcccgaattgaa
gatatcgctgacgaattaattgatttatatgccaagcgtgaagcggaaaaagggtttgca
tttgggccggatgatgacctgcagcacaagttcgaagcggagttcccttatcctgagaca
ccggaccagttgcggtcagctaaagaaattaagcatgatatggaaaagccgaagccaatg
gatcgcttattggttggcgatgttgggtttggcaaaaccgaagttgcgttgcgtgctgcc
ttcaaggcaatcgattatggcaaacaggcagccattttggtgccgacaacgattttagcc
cagcaacactttgacacgatgaaagaacggtttgcggactttccaatcaaagtcgggttg
ttgtcacggttccagacagcgcatcagaacaaggaaacgattaaggggcttaagaacggc
accattgatattgtcgttggcacccatcggctgttgtctaaagatgtcgcttttcgggat
ttgggattgctggtcattgatgaggaacagcgctttggcgttaagcataaggaacggatc
aaacaactcaagagtaatgtcgatgtgctcacgctgacggcgactccgattccaagaacg
ttgaacatgtccatgctaggcgtgcgtgatttgagtgtcattgaaacgccgccaacgaat
cgctatccgattcaaacctttgtcatggagcaaaatccaggcgtgattcgcgaagccatt
gaacgggaaatggaacgtggcggtcaagtcttttacctgcataaccgggtggaagatatg
gaacgtaccgtgagtcaactggaggaactggtgccagatgcaagtgtcggatatgcgcat
ggtcagatgactgagacgcagttggagaacgtcatttatgactttttgcacggtgcttac
gatgtgctggtgaccacaaccattattgaaactggcgtggacatgcccaatgccaatact
ttaatcatcgagaatgccgatcattacggtctgtcacaactttatcaattgcgcggccga
attgggcggtcaagtcgagtcgcttatgcgtactttatgtatcagccgatgaaggtgctc
aatgaggttgctgaaaagcggcttcaggcgattaaaaatttcacggaattgggtagcggc
ttcaaaattgcgatgcgtgatctatcgattcgcggagctggtaacctacttggcaagcag
caacatggcttcatcgattcggtgggctatgatctttacacccagatgctgcaagaagct
gttaataaacggcgcggtattaaatcggctgagaaaacggatgctgaaattgatctgggt
ctggaagcatacctgccaactgattatgtggccgattcccgtcagaagatcgagttgtat
aaacgcattcgagaagcagatagcgatgaagccgaaactgagatcagcgaagatctgatt
gatcgttttggtgactatccgcaaccggtgaccaatttattggcgattgcgcatctcaag
cggtttgctgacttggcttgggtcaatcacgtaacgaaggcggggcaaaaattgacggtt
gtgttgtcaccgcaagcaactgctaaagcacaaggcgagccgattttcaaagcgttaagt
gcgacaacattgaaagcgcaggtcgcgatcacggatggcaagctgacagttacgttagca
ttgccaaaagatatgaagactgcgacttggcttgatcaattgaccggctttttgcaggga
ttactgactgttgtcaatccgcaaccggaaaagaaatcggcatag
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integrated database retrieval system
