Lacticaseibacillus paracasei W56: BN194_26700
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Entry
BN194_26700 CDS
T02337
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lcw
Lacticaseibacillus paracasei W56
Pathway
lcw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN194_26700 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcw03019
]
BN194_26700 (cshA)
03009 Ribosome biogenesis [BR:
lcw03009
]
BN194_26700 (cshA)
Enzymes [BR:
lcw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BN194_26700 (cshA)
Messenger RNA biogenesis [BR:
lcw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BN194_26700 (cshA)
Ribosome biogenesis [BR:
lcw03009
]
Prokaryotic type
rRNA helicases
BN194_26700 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NAT10_TcmA_helicase
AAA_22
DeaD_dimer
Motif
Other DBs
NCBI-ProteinID:
CCK23617
LinkDB
All DBs
Position
complement(2680787..2682295)
Genome browser
AA seq
502 aa
AA seq
DB search
MKFKELGLDHDLLKAIAQSGFEEATPIQAETIPLVLAGKDVIGQAQTGTGKTAAFGLPIL
QNIDKADRSIQALVISPTRELAIQTQEELYRLGQDKKIKVQAVYGGADIRRQIRQLSEHP
QIVVGTPGRILDHIGRHTLKLQNLKVLVLDEADEMLDMGFIDDIEKIVEQMPTARQTLLF
SATIPASIMRLTNKFMHEPVTVKIKAKELTADTVEQYYVRAKDYEKFDVMTRLFDVQDPD
LALIFGRTKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLVATDVAA
RGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSVTFVTPNEIEYLHTIEDLTKK
RMLPMKPPTAEEALMGQISSGLETIKAQVEANDTEKYEAMAESLLENYTPLQLVSAYLKA
VSPDDASAVPVKITPERPLPHRGRSNHGHGNNRGGYKGGYKGKRREGGYQGNRDNKRSYD
KKRNFSDKRKNVKRSFKIRNGE
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
ttgaagtttaaagaactaggtttggatcatgatctcttaaaggcaatcgcccagtcaggt
tttgaggaagcgacgccgattcaagcggagacgatcccactggttctggcaggcaaagat
gtgatcggtcaagcacagaccggtaccgggaaaacggcagcgtttggcttgccgatcctg
caaaacatcgataaggctgaccggagtatccaagcattggtcatttccccaactcgggaa
ttggcgattcagacccaagaagaactttatcgtttaggccaagataagaaaatcaaggtc
caggcagtttacggcggtgccgacattcgccggcaaattcgccaattatcagaacacccg
caaattgtggtggggacaccaggtcgaatccttgaccatattggccgtcacaccctgaag
ttgcaaaatcttaaagtcttggtattagacgaagcagatgaaatgctcgacatgggcttc
atcgatgacattgaaaagattgttgaacaaatgccaaccgcgcgtcagactttgctgttt
tctgcaacgattcctgcttccatcatgcgtttgaccaataagttcatgcatgaaccggtc
accgttaagattaaggcaaaggaactcacagctgataccgttgaacagtattatgtccgt
gcaaaagactacgaaaagttcgatgtcatgactcgtctgttcgatgttcaagacccagac
ttggctttgatctttggtcggaccaagcgtcgtgttgatgaactaacccgtggtctaaag
gcgcgtggttatcgggcagaaggcattcatggtgacttgacacagcaaaaacggatgagc
gttttgcgccagttcaagagtggccaattggacttcctagtggctactgatgtcgccgct
cgtggtctggatatttccggtgtcacccatgtttacaactatgacattccgcaagatcct
gattcctatgttcatcgtatcggccggaccggtcgtgcaggtcacaagggtgtttccgtc
accttcgtcaccccaaacgaaatcgaatatttgcacacgatcgaagacttgaccaagaag
cggatgctgccgatgaaaccaccaacagcagaagaagcattgatgggccagatctccagc
ggtttagaaacgatcaaggcacaagtcgaagctaacgatactgaaaagtacgaagctatg
gctgaatccttgttggaaaactacaccccattacagttggtttccgcttatcttaaggca
gtcagcccggatgatgccagtgccgttccggttaaaatcacgccagaacgtccgctgcca
catcgcggtcgcagcaatcacggtcacggcaataatcgtggcggttataaaggcggctac
aagggtaagcgtcgcgaaggcggctatcaaggcaaccgtgataataaacgcagttacgac
aaaaaacgcaacttcagcgataaacgcaagaatgttaagcgtagtttcaaaatccgtaat
ggcgaatga
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