Lacticaseibacillus casei 12A: LCA12A_0042
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Entry
LCA12A_0042 CDS
T03665
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
lcx
Lacticaseibacillus casei 12A
Pathway
lcx03030
DNA replication
lcx03410
Base excision repair
lcx03420
Nucleotide excision repair
lcx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lcx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LCA12A_0042
03410 Base excision repair
LCA12A_0042
03420 Nucleotide excision repair
LCA12A_0042
03440 Homologous recombination
LCA12A_0042
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lcx03032
]
LCA12A_0042
03400 DNA repair and recombination proteins [BR:
lcx03400
]
LCA12A_0042
Enzymes [BR:
lcx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LCA12A_0042
DNA replication proteins [BR:
lcx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LCA12A_0042
DNA repair and recombination proteins [BR:
lcx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
LCA12A_0042
NER (nucleotide excision repair)
GGR (global genome repair) factors
LCA12A_0042
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_polI_exo1
5_3_exonuc
Spectrin_Dys-1
HHH_2
HHH_5
Motif
Other DBs
NCBI-ProteinID:
EKP98755
LinkDB
All DBs
Position
complement(1712208..1714853)
Genome browser
AA seq
881 aa
AA seq
DB search
MASKTKLLLVDGNSVAFRAFFALYNQLDRFTNQDGLHTNAIYAFNNMLEIVLKAVQPDAA
LVAFDAGKTTFRTAKYADYKSGRAKTPSELLEQLPYIKELLDDMGIAHYELKDYEADDII
GTMAKRADEAGWETTIVTGDRDLTQLTTDRTTVQVTVKGVNELEAYTPAHVKEKLGITPA
QIIDLKGLMGDTSDNYPGVTKVGEKTALKLLNQYGSMENLYANVDDMKKSKLKENLINDK
DNAFLSKQLATIDRDAPLTVDLADVTYAGPDLEKLRDFYTKMNMNSLLKKIGGSVAKPVQ
AVHFSVLDEQSILALTKLTEPLTFEIEMLEDNYHVAEQIGFFIGTKEETYVSTDVTLLTL
PAVKRWLEDAKRDLTVFDGKRNIVAANRLGVKLPDIAFDVLLASYLINPDENSNDLGKIA
EDHDYHDLPRDEDIYGKGAKRQVPEDDKLFGQFARKSNALFALRPDLTGDLEKQAQTDLF
TDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEEKIYAEAGVKFNLNSPKQL
GEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKA
QLPDHKIHTRYLQTLTQTGRLSSVDPNMQNIPARDEGKIIRKAFVPSHEGWQIFSSDYSQ
IELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQAKATNFGIVYG
ISDYGLSQNIGISRKQAKAFIDGYFDQYPKVHDYMDAMVKKAREDGYVETLFHRRRYLPQ
IHSRNFNLRKFAERTAMNTPIQGSAADIIKVAMIRMQKALDEAGLQAKMLLQVHDELIFE
APEEEIAQLSELVPKVMDSAVHLDVPLKVESHYGPTWFDAK
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcaaaacaaaattattattagtcgatggtaactcagtcgcatttcgtgcattt
tttgctttatataatcaattagaccgttttacgaaccaagatggcttgcacaccaacgcc
atttatgcgtttaacaacatgctcgagattgttttaaaggcagtccaaccggatgctgct
ttagtagcatttgatgcaggcaagacgacttttcgcacagccaaatatgctgattacaaa
agtggtcgcgccaagacaccgagcgaattgctggaacaattgccttatatcaaggaatta
ttggatgacatgggcatcgcgcattatgaattaaaggattacgaagccgatgacattatc
ggcacaatggctaagcgtgcggatgaggccggctgggaaacgacgattgtcactggtgat
cgcgatttgacgcagctgacgaccgatcggaccacagttcaagtgacagtgaagggtgtc
aatgagcttgaagcctacaccccagcacatgtcaaagaaaagcttggcatcacaccggct
caaattattgatctcaaaggtttgatgggtgatacctcggacaactatcctggggtgacc
aaggtcggtgaaaaaacagctctgaaattgctcaatcaatacggaagcatggaaaacctc
tatgctaatgtggatgacatgaaaaagagcaagcttaaagagaatttgatcaacgataaa
gataacgctttcttaagcaaacagttggcaacgatcgatcgcgatgcaccgcttactgtg
gacttagcggatgtgacatatgctggaccggatttagaaaaactccgggacttctataca
aagatgaatatgaattcgttgctcaaaaaaatcggtggcagtgtcgctaaacctgttcag
gcggttcatttttccgtactggatgagcaatcgattcttgcactcaccaagctgaccgaa
cctctgacttttgagattgaaatgctcgaggataattatcatgtggccgaacaaatcggt
ttctttattggcactaaggaagaaacttacgtgagtaccgatgtcactttgctgacgctg
ccagcggttaaacggtggctggaagatgccaaacgagatctgacagtttttgatggcaaa
cgaaacatcgtcgccgctaatcgactcggcgtgaaattaccggatatcgcttttgacgtg
ttattagcgtcctatttgattaatcctgacgaaaacagcaatgatttgggtaaaatcgct
gaagatcacgattatcatgacttgccgcgtgatgaggatatttatggcaaaggcgccaaa
cggcaagtgccagaagacgataagctgtttggccagtttgctcgcaagtctaatgctttg
ttcgcattgcggcctgatttgactggcgatttggaaaagcaggcccaaacagacttattc
actgatatggaaatgccgctttctcgggttttggcagaaatggaaattcaagggattacc
ctaaatgctaaaacgctgaaggctatgggcactgaattctcacaaagcatcaagattttg
gaagagaaaatctatgcagaagctggcgtgaagttcaatttgaactcaccaaagcagctc
ggcgaaattctttttgaaaaattgaatctgcctgtgatcaagaaaacgaagaccggttac
tcgacaagcgttgacgtgttgaacgaattgaaatcggcaagtccgattgtgcaggacatt
ttggattatcgcggctgggcgaaattaaattcgacttatgttgtcggcttgttgaaggcg
caattgcctgatcataagattcatacccgctatttgcagactttgacgcaaactggccga
ctgagctcagttgatcctaacatgcagaatattcctgctcgtgatgaaggtaagattatt
cgcaaggcctttgtaccgtcacatgaaggttggcaaatttttagttctgactattcccaa
atcgagttgcgggtgttgtcgcatatttccggggatgagaatatgcaggaggcgtttaaa
catggcgtcgacattcacgccaacactgcgatgaagatttttggcctgagttcgccagat
caagtcacaccagatatgcggcggcaagccaaggcaactaacttcggtattgtgtatggc
attagtgactatggtctatcccaaaacattggcatttcccgtaaacaggcaaaagcgttc
attgatggttattttgatcaatatcctaaggttcatgattatatggatgcgatggtcaag
aaggcgcgtgaagacggctatgtcgaaaccctgttccatcggcggcgctatctgccacaa
attcactcacgcaacttcaatctgcgtaagtttgccgagcggaccgctatgaatacgccg
attcagggtagcgctgcggatattatcaaggtagccatgattcgcatgcaaaaggccttg
gatgaggccggtttgcaagctaaaatgcttctacaggttcacgatgaactcatcttcgag
gcacctgaagaagaaattgcccagcttagcgaactcgtgccaaaagtcatggactcagca
gttcaccttgatgtgccattaaaggttgaaagtcattatggaccaacttggttcgacgct
aaataa
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