Lacticaseibacillus casei 12A: LCA12A_0056
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Entry
LCA12A_0056 CDS
T03665
Name
(GenBank) CMP-binding factor
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
lcx
Lacticaseibacillus casei 12A
Brite
KEGG Orthology (KO) [BR:
lcx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcx03019
]
LCA12A_0056
Messenger RNA biogenesis [BR:
lcx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LCA12A_0056
BRITE hierarchy
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Paralog
GFIT
Motif
Pfam:
HD
tRNA_anti-codon
TraI_2
Motif
Other DBs
NCBI-ProteinID:
EKP98769
LinkDB
All DBs
Position
complement(1727379..1728356)
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AA seq
325 aa
AA seq
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MTTLVKRLFDYHNEEDVRLPVLIKSAEVRVAKNGKKFIAMIFQDNSGHISGKFWDASDND
IAQFKAGEVVQLSGKRELYQGNPQIKIFSLRLATQEEGNDPKAFVERAPEAPSDMEEELN
SYIFEITNANWNRIVRKLINDHKKAFFSYPAAKSNHHAFAGGLAFHTLSILRLAKSVVQQ
YSSLNKSLLYAGAILHDLGKTIELSGPISTDYTVEGNLIGHIVLIDEQIVLAAQQLKIDI
NAEDMLLLRHVVLAHHGLLEYGSPVRPELLEAQVLHDLDELDASINMMTTAYQHVDPGTF
TERLFGMDNRRFYRPKNGQTFPDPH
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
gtgacgaccttggtaaaacggcttttcgattatcataatgaagaagatgttcggcttcct
gtgctgattaaatcagctgaagtgcgtgtcgcaaagaatggcaaaaaatttattgcgatg
atttttcaagacaattcaggacatatttcaggtaagttctgggatgctagcgacaatgac
attgctcagtttaaggctggcgaagtcgtccaattgtcgggtaagcgtgaattatatcaa
ggcaatccgcaaattaagattttttcattgcggttggcaacccaagaggaaggcaatgat
cctaaagcctttgttgagcgggcgccagaagcacccagtgatatggaagaggaactgaac
agttacatcttcgaaatcaccaatgctaactggaatcgaattgtccgtaaactgatcaat
gatcacaagaaggcatttttcagttatccggccgccaagtcaaatcaccatgcttttgct
ggtggtctcgcttttcatacgctaagcatcttgcgacttgctaaaagtgtcgttcaacag
tattcgagcttgaacaaaagtttgctatatgcaggcgcaattttacatgatctcggtaag
accattgagttaagcgggccaatctcaactgattacacggttgaaggcaacttgattggt
cacatcgttctcattgacgaacagattgtcttagcagcacagcaacttaaaattgatatc
aacgctgaagatatgctcttactacgtcatgtcgtgcttgcacatcacggattgcttgaa
tacggctcgccggtgcggccagagctgcttgaagcgcaagtgttgcatgatttagacgaa
ttggacgcatcaatcaatatgatgacaaccgcctaccaacatgttgatcctggtaccttc
acagaacgacttttcggtatggacaatcgtcgcttctatcgacctaaaaatggtcaaact
tttccggatccgcactag
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