Lacticaseibacillus casei 12A: LCA12A_0219
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Entry
LCA12A_0219 CDS
T03665
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lcx
Lacticaseibacillus casei 12A
Pathway
lcx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lcx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LCA12A_0219
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcx03400
]
LCA12A_0219
Enzymes [BR:
lcx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LCA12A_0219
DNA repair and recombination proteins [BR:
lcx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LCA12A_0219
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
DUF7398
Motif
Other DBs
NCBI-ProteinID:
EKP96085
LinkDB
All DBs
Position
complement(2486767..2490291)
Genome browser
AA seq
1174 aa
AA seq
DB search
MNLIDMVQADPALSALWPKLKTGRHLVTGLSGSAKTVFFGALLQQRPQQILIVENNRFHA
DELAADLSSLLGDAVVYDFPVEDVLAAEVAVSSPETRNDRINALTFIQSGKPGIIVTSLA
GYKRLLPSPADWAASELAIDMTSELDPQTVAKQLVAMGYRRDSLVSAPGQFAIRGGIIDV
YPLNQDDPIRIELFDTEIDSIRSFDIATQRSLQKLQQITIAPATDMVATDQVLAAAGERI
TKQANAYKAKVKNAAAKQAVTDGLLTTGQQLSAHERPENLALYAAELYPEQQRISDYLQP
DALVAFDDYSRLLDSDTTLVQDTAEWYSQLQEEGRLLPSTPNLTIQELAQQDKRPRLYLS
LFQKGMGQLRLDSLTNIPSRNVQQFFSQMPLLKTETDRWVKQQQTVVFLITDKNRLEKLS
ETLSDFEISNVMTAPTKLLPSQVQLTEGSLKNGFELPDLKLVVVTEHELFNARQRRHARH
QTLANTERLRSYNELKPGDYVVHVNHGIGQYTGMETLEVDGVHRDYITIVYRNNDKLFIP
VDQLNLVQKYVSADGKTPSVNKLGGAEWQKTKRKVAARIEDIADELIDLYAKREAEKGFA
FGPDDDLQHKFEAEFPYPETPDQLRSAKEIKHDMEKPKPMDRLLVGDVGFGKTEVALRAA
FKAIDYGKQAAILVPTTILAQQHFDTMKERFADFPIKVGLLSRFQTAHQNKETIKGLKNG
TIDIVVGTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRT
LNMSMLGVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDM
ERTVSQLEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANT
LIIENADHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSG
FKIAMRDLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNKRRGIKSAEKTDAEIDLG
LEAYLPTDYVADSRQKIELYKRIREADSDEAETEISEDLIDRFGDYPQPVTNLLAIAHLK
RFADLAWVNHVTKAGQKLTVVLSPQATAKAQGEPIFKALSATTLKAQVAITDGKLTVTLA
LPKDMKTATWLDQLTGFLQGLLTVVNPQPEKKSA
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgaatttgatcgacatggtgcaggcagatccagcattgtcggcattatggccgaagctg
aaaacgggtcgccatttggtgacgggactgtcgggctcagccaagacggtcttttttggc
gcactattgcaacagcgaccgcagcagattctaattgttgaaaacaatcgctttcatgcc
gatgaattagctgctgatttaagcagtttgctcggagatgcagtggtttacgattttcca
gttgaggatgtgttggcagctgaagtcgcggttagttcgccagagacgcgtaacgatcgt
attaatgctttgacgtttattcaaagcggcaaacctggaatcatcgtaaccagtctggcc
ggttataagcggcttttgccgtcaccagccgattgggcagctagtgaattggccattgat
atgacttccgagcttgatccgcaaaccgttgccaaacagctggtcgccatgggctatcga
cgcgattcgttagtcagcgcgccgggacagtttgccattcgcggcggcatcattgacgtc
tatccgttgaatcaagacgatccgattcgaattgaattgttcgatactgaaatcgattcc
atccgcagttttgacattgccacccaacgtagtctgcaaaaacttcagcagatcacgatt
gcgccggcaaccgatatggtggcgactgatcaggttttggccgctgctggcgagcgcatt
accaagcaagctaatgcctacaaggcaaaagtgaaaaatgccgccgctaagcaggccgtt
acagatggtttattgacgactggccagcagctatcggcccacgagcgtcctgaaaatcta
gctttatatgcggccgaactatacccagagcagcaacgcatcagtgactatttgcaacca
gatgcactggtagcattcgatgattacagtcgtttgctagatagcgatacaaccttggtg
caggatacggcagaatggtactcacagttgcaagaagaaggccgtctgctacctagcacg
ccgaacctgacgattcaggaacttgcacagcaagataagcgcccgcggctttaccttagc
ctttttcaaaaaggcatggggcagttgcgacttgacagcttgaccaatattcccagccgt
aacgtgcagcaatttttcagtcagatgccgttactcaaaacagaaaccgatcgctgggta
aagcagcagcaaaccgtggtgttcttgatcacagataaaaatcggctggaaaagctgagc
gaaacgttgtcagattttgagattagcaatgtcatgacagccccgactaagctgttgcca
agccaggtgcaattgacagaaggcagcctgaaaaatggcttcgagctgcccgacttgaaa
ttagtcgttgtgaccgagcacgagctattcaatgctcgccaacgtcgtcacgcacggcac
caaacactggcgaatacagagcgattgcgaagctataacgagctcaagcctggtgactac
gtggtgcatgttaatcacgggatcggtcaatacaccgggatggagacattagaagttgac
ggtgtgcatcgtgattacattacgattgtttaccgcaacaacgataagctgttcattcca
gttgaccaactaaatctagtccaaaaatatgtttccgcagatggcaaaacgccaagcgtc
aataaacttggtggtgctgagtggcagaaaaccaaacgcaaagtagctgcccgaattgaa
gatatcgctgacgaattaattgatttatatgccaagcgtgaagcagaaaaagggtttgca
tttgggccggatgatgacctgcagcacaagttcgaagcggagtttccttatcctgagaca
ccggaccagttgcggtcagccaaagaaattaagcatgatatggaaaagccgaagccaatg
gatcgcttattggttggcgatgttgggtttggcaaaaccgaagttgcgttgcgtgctgct
ttcaaggcaatcgattatggcaaacaggcagccattttggtgccgacaacgattttagcc
cagcaacactttgacacgatgaaagaacggtttgcggactttccaatcaaagtcgggttg
ttgtcacgatttcagacagcgcatcagaacaaggaaacgattaaggggcttaagaacggc
accattgatattgtcgttggcacccatcggctgttgtctaaagatgtcgcttttcgggat
ttgggattgctggtcattgatgaggaacagcgctttggcgttaagcataaggaacggatc
aaacaactcaagagtaatgtcgatgtgctcacgctgacggcaactccgattccaaggacg
ttgaacatgtccatgctaggcgtgcgtgatttgagtgtcattgaaacgccgccaacgaat
cgctatccgattcaaacctttgtcatggaacaaaatccaggcgtgattcgcgaagccatt
gaacgggaaatggaacgcggcggtcaagttttttacctgcataaccgggtggaagatatg
gaacgtaccgtgagtcaactggaggagctggtgccagatgcaagtgtcggatatgcgcat
ggtcagatgactgagacgcagttggagaacgtcatttatgactttttgcacggtgcttac
gatgtgctggtgaccacaaccattattgaaactggcgtggacatgcccaatgccaatact
ttaatcatcgagaatgccgatcattacggcctgtcacaactttatcaattgcgcggccga
attgggcggtcaagtcgagtcgcttatgcgtactttatgtatcagccgatgaaggtgctc
aatgaagttgctgaaaagcggcttcaggcgattaaagatttcacggaattgggtagtggt
ttcaaaattgcgatgcgtgatctatcgattcgcggagctggcaacctacttggcaagcag
caacatggcttcatcgattcagtgggctatgatctttacacccagatgctgcaagaagct
gttaacaaacggcgcggtattaaatcggctgagaaaacggatgctgaaattgatctgggt
ctggaagcatacctgccaactgattatgtggccgattcccgtcagaagatcgagttgtat
aaacgcattcgagaagcagacagtgatgaagccgaaactgagatcagcgaagatctgatt
gatcgttttggtgactatccgcaaccggtgaccaatttattggcgattgcgcatctcaag
cggtttgctgacttggcttgggtcaatcacgtaacgaaggcggggcaaaaattgacggtt
gtgttgtcaccgcaagcaactgctaaagcacaaggcgagccgattttcaaagcgttaagt
gcgacaacattgaaagcgcaggtcgcgatcacggatggcaagctgacagttacgttagca
ttgccaaaagatatgaagactgcgacttggcttgatcaattgaccggctttttgcaggga
ttactgactgttgtcaatccgcaaccggaaaagaaatcggcatag
DBGET
integrated database retrieval system
