Lacticaseibacillus casei 12A: LCA12A_0232
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Entry
LCA12A_0232 CDS
T03665
Name
(GenBank) cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lcx
Lacticaseibacillus casei 12A
Pathway
lcx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LCA12A_0232
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcx03019
]
LCA12A_0232
03009 Ribosome biogenesis [BR:
lcx03009
]
LCA12A_0232
Enzymes [BR:
lcx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LCA12A_0232
Messenger RNA biogenesis [BR:
lcx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LCA12A_0232
Ribosome biogenesis [BR:
lcx03009
]
Prokaryotic type
rRNA helicases
LCA12A_0232
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
EKP96098
LinkDB
All DBs
Position
complement(2506009..2507517)
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AA seq
502 aa
AA seq
DB search
MKFKELGLDHDLLKAIAQSGFEEATPIQAETIPLVLAGKDVIGQAQTGTGKTAAFGLPIL
QNIDKADRSIQALVISPTRELAIQTQEELYRLGQDKKIKVQAVYGGADIRRQIRQLSEHP
QIVVGTPGRILDHIGRHTLKLQNLKVLVLDEADEMLDMGFIDDIEKIVEQMPTARQTLLF
SATIPASIMRLTNKFMHEPVTVKIKAKELTADTVEQYYVRAKDYEKFDVMTRLFDVQDPD
LALIFGRTKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLVATDVAA
RGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSVTFVTPNEIEYLHTIEDLTKK
RMLPMKPPTAEEALMGQISSGLETIKAQVEANDTEKYEAMAESLLENYTPLQLVSAYLKA
VSPDDASAVPVKITPERPLPHRGRSNHGHGNNRGGYKGGYKGKRREGGYQGNRDNKRSYD
KKRNFSDKRKNVKRSFKIRNGE
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
ttgaagtttaaagaactaggtttggatcatgatctcttaaaggcaatcgcccagtcaggt
tttgaggaagcgacgccgattcaagcggagacgatcccactggttctggcaggcaaagat
gtgatcggtcaagcacagaccggtaccgggaaaacggcagcgtttggcttgccgatcctg
caaaacatcgataaggctgaccggagtatccaagcattggtcatttccccaactcgggaa
ttggcgattcagacccaagaagaactttatcgtttaggccaagataagaaaatcaaggtc
caggcagtttacggcggtgccgacattcgccggcaaattcgccaattatcagaacacccg
caaattgtggtggggacaccaggtcgaatccttgaccatattggccgtcacaccctgaag
ttgcaaaatcttaaagtcttggtattagacgaagcagatgaaatgctcgacatgggcttc
atcgatgacattgaaaagattgttgaacaaatgccaaccgcacgtcagactttgctgttt
tctgcaacgattcctgcttccatcatgcgtttgaccaataagttcatgcatgaaccggtc
accgttaagattaaggcaaaggaactcacagccgataccgttgaacagtattatgtccgt
gcaaaagactacgaaaagttcgatgtcatgactcgtctgttcgatgttcaagacccagac
ttggctttgatctttggtcggaccaagcgtcgtgttgatgaactaacccgtggtctaaag
gcgcgtggttatcgggcagaaggcattcatggtgacttgacacagcaaaaacggatgagc
gttttgcgccagttcaagagtggccaattggacttcctagtggctactgatgtcgccgct
cgtggtctggatatttccggtgtcacccatgtttacaactatgacattccgcaagatcct
gattcctatgttcatcgtatcggccggaccggtcgtgcaggtcacaagggtgtttccgtc
accttcgtcaccccaaacgaaatcgaatatttgcacacgatcgaagacttgaccaagaag
cggatgctgccgatgaaaccaccaacagcagaagaagcattgatgggccagatctccagc
ggtttagaaacgatcaaggcacaagtcgaagctaacgatactgaaaagtacgaagctatg
gctgaatccttgttggaaaactataccccgttacagttggtttccgcttatcttaaagca
gtcagcccggatgatgccagtgccgttccggttaaaatcacgccagaacgtccgctgcca
catcgcggtcgcagcaatcacggtcacggcaataatcgtggtggttataaaggcggttac
aagggtaagcgtcgcgaaggcggctatcaaggcaatcgtgataataagcgcagttacgac
aaaaaacgcaacttcagcgataaacgcaagaatgttaagcgtagtttcaaaatccgtaat
ggcgaatga
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