Lacticaseibacillus casei 12A: LCA12A_0784
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Entry
LCA12A_0784 CDS
T03665
Name
(GenBank) ATP-dependent RNA helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
lcx
Lacticaseibacillus casei 12A
Brite
KEGG Orthology (KO) [BR:
lcx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcx03019
]
LCA12A_0784
03009 Ribosome biogenesis [BR:
lcx03009
]
LCA12A_0784
Enzymes [BR:
lcx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LCA12A_0784
Messenger RNA biogenesis [BR:
lcx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LCA12A_0784
Ribosome biogenesis [BR:
lcx03009
]
Prokaryotic type
rRNA helicases
LCA12A_0784
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
CMS1
Motif
Other DBs
NCBI-ProteinID:
EKQ00832
LinkDB
All DBs
Position
732788..734134
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AA seq
448 aa
AA seq
DB search
MENQFKQFQLKPFVIDGLNAMAITAPTPIQQKVIPALLRGENIVGQSQTGSGKTHAFLVP
LLSMVDPTEDATQVVITAPSRELANQIYAVAQQLIQTEPAIRINRLVGGMDKQKQIDKLQ
NHQPHVAIGTPGRILDMIKSYDLVPSSVRHFVVDEADMTLDMGFLETVDAIASSFPDHLQ
MAVFSATIPQKLEPFLRKYMDNPTTIELKPQSVIADTVENILIAAKGRDKNELIYQLVTM
GHPFLVLIFANTKTSVDAIHDFLKHQGLKVAKIHGGIQPRERRRVMKDVADLKYQYVVAT
DLAARGIDIKGVSMVINAEIPRDNEFFIHRVGRTGRNGMAGTAVTLYEPGQEDQIAELEH
MGIKFAPKMIKNGELVDTYDRNRRVHRKPKQEDTSLAIRGLVKKAKQKHMPNYRKKIRTA
VLLERKRNTKIARRQALLAEKRKNRKRG
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atggagaatcaattcaaacaatttcaactaaaaccttttgttatcgatggtctcaatgca
atggccatcaccgccccgacacccattcaacaaaaagttattccagcacttttgcgtggt
gaaaacattgttgggcaaagccagaccggtagcgggaaaactcacgcctttttggtcccc
ttactcagtatggtagatcctaccgaagatgcgactcaggtcgtgatcactgccccttca
cgtgagttagccaatcaaatttatgcggttgcccagcaactcatacaaactgagccggcg
attcggattaaccgtttagtcgggggaatggacaagcaaaagcagatcgacaagttgcaa
aatcatcaaccacatgtggctatcggaacgccaggtcgaatcttggacatgatcaaaagc
tatgatttagtgccatcgtctgtccgtcattttgtagtcgacgaagctgacatgacgctg
gatatgggcttcctcgaaacggttgatgcgattgcctcgagttttccagatcatctgcag
atggctgttttttcggcgactattccgcaaaaactggaacccttcttgcgcaagtacatg
gacaatccaacgacgattgaattgaaaccgcagtcggtgattgctgatacggttgaaaac
attttgattgcggcaaaagggcgcgataaaaatgagttaatctatcagcttgtcacgatg
gggcatccctttttagtgctgatttttgctaacaccaagaccagcgtggatgctatccat
gacttcttgaagcatcaaggtttgaaggtggccaagattcatggtggcattcagccgcga
gaacgtcggcgcgtgatgaaggatgttgccgacctcaaatatcagtatgtggtcgccact
gatcttgctgctcggggtatcgatatcaaaggggtctcaatggtcatcaatgccgagatt
ccccgcgacaacgagttctttattcaccgagtgggccgaaccggtcggaatggcatggct
ggtacagcggtgacactgtacgaaccgggacaggaagatcaaattgccgaattagagcat
atgggcattaagtttgcgccgaaaatgatcaaaaacggtgagcttgtagacacttatgac
cgcaatcgtcgagttcaccgcaaaccgaagcaagaagacaccagtcttgccattcgcggt
ctggtgaaaaaggcaaagcaaaagcacatgccgaattatcgtaaaaagattcgaactgcg
gtgttattagaacgcaaacgaaataccaaaattgctcggcgccaagcgctgttagcagaa
aaacgcaagaaccgcaaacgagggtga
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