Lacticaseibacillus casei 12A: LCA12A_0827
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Entry
LCA12A_0827 CDS
T03665
Name
(GenBank) ATP-dependent nuclease, subunit A
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
lcx
Lacticaseibacillus casei 12A
Brite
KEGG Orthology (KO) [BR:
lcx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcx03400
]
LCA12A_0827
Enzymes [BR:
lcx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LCA12A_0827
DNA repair and recombination proteins [BR:
lcx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
LCA12A_0827
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
DEAD
PDDEXK_1
AAA_12
ResIII
DUF2059
AAA_16
Herpes_ori_bp
NACHT
Motif
Other DBs
NCBI-ProteinID:
EKP99202
LinkDB
All DBs
Position
complement(1458235..1461939)
Genome browser
AA seq
1234 aa
AA seq
DB search
MTQFTTSQQAAITHDGHDVLVSASAGSGKTTVLVERIIQKILKQHADITRMLIVTFTRAA
TAEMRTKIQTALKKALTERRHELSGEDRRHLANQIAMVNAAKISTLDAFSLQIVQTYYYV
IDLDPGFRLLTDETERYMLQERVWDDLREQLYASDEAPAFEQLTANFSGDRDDSGLQDLM
FELIRQAGATTDPKAYLEGLATPYAPEKWEATFSQQIWPRVKGQLLQIATSLTQASALAN
QLPNPIWYQQIQADLAPLQTLLETNAPTYDTVRSVLISHEFAAWSRISKGLDGADKDTKN
AAKDLRDAAKKTWQNKLAPTFALAAEQIGDLLREAQPLVATLANVALKFEDALTAEKAAR
HVQDYSDIAHNALRILQQKDPQTGAPIADNYRASFDEVMVDEYQDISPLQEALLAAVSTT
TPGDRFMVGDVKQSIYGFRLADPQLFIHKYQTFQDAPTDPAAPERIILAENFRSTKNVLA
FTNLIFSQIMDPEVGDLSYDNAAALKYGARDYGDAHPAVKVLLYSKATSDEDSSDASELP
GDADDNEPVDIATGQTQLVLAEIQRLINDPDAQLWDRQAQEYRRIHYRDITLLTRQTSQN
SLIQTQFAAAGVPLFVADTKNFFKTTELMVMLALLKVIDNQKQDIPLVAVLRSPIVGLSA
DQLALIRLAAKQVPYYDAVTAFLQAEPKTPLAQRTHDMLTHFFNQLSHFRDLARENDLVT
LLWAIYQDTGFLDYVGGTPGGSQRQANLQALIDRARTYEAGGFKGLFAFIHFITLMQKQD
QDLAMPAQVDPDNDAVKLMTIHKSKGLEFPVVFLMQANKHFNMRDQTGTAILTKQGIGIK
WLDPETRVEYELPQYQAAKAARQNQTLAEEMRLLYVALTRAQQRLYVVGATMSGNQLTSA
DKTVEKWAAAAEGEARVLAPQVRSGATSYLDWIGPALIRHPQARGLAETTIKPALVGDET
EFTIEIDVNPQVTPTATPEKVSDDSGTMVDLSAWFKKAYPFQAATTTTGFQSVSEIKRAF
DDPDTIDLVNADRFLGPKPPMRDLTAPAFLTETPSGISPAAIGTATHLLLQLVDLAKPIT
MASLMALRDQLATTQVIAVDVAKHIDLTALIRFFETDLGRLLLAKPQQVHREVPFSMLLP
ADQVFEALADDPGEDVLIHGIIDGYVSDEQGVTLFDYKTDHNPNTAVLVDRYRGQLNLYA
QALQDLQPKPVLHRYLVFLRTGTVVDLVASGAGK
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atgacccaatttacaacctctcaacaagcagcgattacccacgacgggcatgacgtgctg
gtttccgcctctgctggtagcgggaaaaccaccgtgttggttgagcgaattattcaaaag
attctcaaacagcatgccgacattacccggatgttgatcgtgacatttactcgtgcggca
acagccgaaatgcgaaccaagattcagacggctttgaagaaggcactcaccgagcgacga
catgagcttagtggtgaggatcggcgtcatcttgccaatcaaattgccatggttaatgcg
gctaaaatcagtacgctggatgcctttagtttgcaaattgtccaaacttactactatgtc
attgatcttgatcccggttttcggttgcttacggatgaaactgaacgctacatgctgcaa
gagcgcgtttgggacgatttgcgtgaacaattatatgccagtgacgaagcacctgcgttt
gaacaactcacggctaattttagcggggatcgagatgatagcggtttgcaagacttgatg
tttgagttgatccgccaagccggtgcgacaactgatcccaaggcctatttggaaggattg
gcaacgccgtatgcaccggagaaatgggaagcgacctttagccaacaaatctggccgcga
gttaaaggccaattgctgcaaatagccaccagtttgactcaggcgtcagcgttagccaat
caactgccaaacccaatttggtatcagcaaattcaggctgatcttgccccattgcaaaca
ctattagaaacaaatgcacccacatacgatacagtccgcagtgtcttgatttcccatgaa
tttgctgcttggtcgcgcatcagtaaaggactggatggcgcagataaggacactaaaaac
gcggcaaaagatctacgtgatgctgcaaagaaaacttggcagaacaaactggcaccaact
tttgccttagctgctgagcaaattggcgatttgttgcgggaagctcaacctttagtggcc
acattagctaatgtggccttaaagttcgaagacgcgttgaccgctgaaaaggccgctcgg
catgttcaagactatagtgatattgcgcataatgctttacgcattttgcaacaaaaagat
ccacaaaccggtgcaccaattgccgataactatcgcgcgagtttcgatgaagtgatggtg
gatgagtatcaggacattagtccgttgcaggaggctttacttgccgctgtcagcaccact
acgccaggtgatcgattcatggtcggggatgtcaaacagagtatttacggcttccgactg
gccgatccgcaactatttattcataaataccaaacatttcaagatgcaccgaccgatccc
gccgcgccagaacggattattttagctgagaattttcgctcgaccaaaaatgtgttggcg
tttaccaatctgattttcagtcaaatcatggatccggaagttggcgatttgagctatgac
aacgcagcggctttaaagtatggtgcgcgtgattacggtgatgcgcatccggcagtgaaa
gtgttgttgtatagcaaagcaacatctgatgaagattcttctgatgcaagtgagttaccg
ggagatgctgatgataacgagccagtggacattgcgactggccaaacgcagctagtcttg
gccgaaattcagcgattaatcaacgatcccgatgcgcaactatgggatcgtcaggcgcag
gagtatcggcgcatccactatcgcgatatcacattactgacgcgtcaaaccagtcaaaac
agtctgattcaaacacagtttgctgcagcaggcgtcccattgtttgtggccgataccaag
aattttttcaaaacgactgaattgatggttatgctggcgcttttaaaagtgattgataac
caaaaacaagatattccgttagtggctgtgttgcgttcgccgattgttggtttgtcagct
gatcagttggcactgattcgcttagcggcaaaacaggtgccatattatgatgccgtgaca
gcatttctacaagcagaaccaaaaacgccacttgctcagcggacgcatgacatgctgacg
cacttcttcaaccagctcagccattttcgcgacttggcccgagaaaatgacttggtcact
ttgttgtgggctatctatcaggataccggatttcttgactatgttggcggcaccccaggg
ggcagtcagcgccaggcaaatctacaagccttgattgatcgagcccgcacttatgaagcg
ggtggcttcaaagggttatttgcctttattcactttattactttgatgcagaagcaggat
caagatttggcaatgcctgcccaagtcgatccagataatgatgcggtgaagttgatgacc
attcacaaaagcaagggtttggaattcccggttgtctttttgatgcaggcaaacaaacat
tttaatatgcgcgatcaaaccggcactgccattttgacaaaacaaggtatcggtattaaa
tggctagatcctgaaactcgcgttgaatatgaattaccccagtatcaagctgccaaagct
gcacggcaaaatcagaccttggctgaagagatgcggttgttgtatgttgctttgacgcgt
gcgcaacagcgactttacgtggttggcgcaacgatgagtggcaatcagctgacgtctgct
gataaaacggtcgaaaaatgggctgcggcggcggaaggtgaagcgcgtgttttggcgccg
caagtccgcagtggggcaacgagctatctcgactggatcggaccggccttgatcagacat
ccacaggcccgtgggttagccgaaacaactatcaaacctgcgctcgtcggtgatgaaacg
gagtttacaattgaaattgacgtgaatccgcaagtcacaccgactgcaactccggaaaaa
gtttctgacgattcaggaacaatggtcgacttatctgcgtggtttaaaaaggcttatcct
ttccaagcagcaacaactacgacaggttttcaaagtgtttcagaaattaaacgcgcattt
gatgatccagataccattgatctggtcaatgcagatcgtttcctcggtcccaagccaccg
atgcgggatttaacggcgccagcgtttctgaccgaaacccctagtggcatcagcccagca
gctattgggacggcaacgcatctattgctacagttagtggatctcgccaagccgatcacc
atggccagcttgatggctttgcgcgatcaattggccaccacgcaggtcattgcggtcgat
gtggcaaagcacattgatttgacggcacttattcgcttctttgaaactgatttaggtcgg
ttgttattggctaagccgcagcaggttcatcgtgaagttccgttttccatgctgctgcct
gctgaccaggtttttgaagcattggccgatgacccaggcgaggacgtcttgattcacggg
attattgatggatacgtgagtgatgaacaaggcgtcacgctgtttgactacaaaactgat
cataacccgaacacggccgttttagtggatcgttatcgtggacagttaaacttatatgca
caagctttgcaggatttacaacccaaaccggtgctgcatcgctatctggtctttttgcgc
accggaaccgttgtcgatctggtagcatcaggtgctggtaaatag
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