Lacticaseibacillus casei 12A: LCA12A_0883
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Entry
LCA12A_0883 CDS
T03665
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lcx
Lacticaseibacillus casei 12A
Pathway
lcx03410
Base excision repair
lcx03430
Mismatch repair
lcx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lcx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LCA12A_0883
03430 Mismatch repair
LCA12A_0883
03440 Homologous recombination
LCA12A_0883
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcx03400
]
LCA12A_0883
DNA repair and recombination proteins [BR:
lcx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LCA12A_0883
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LCA12A_0883
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LCA12A_0883
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
EKP99257
LinkDB
All DBs
Position
complement(1515079..1517373)
Genome browser
AA seq
764 aa
AA seq
DB search
MTQYQWQLAPQPAAADAHALSETLGVPPFLATLLLQRGINDQADYDAFVHPDTSRLHDPF
ALHDMDKAVARILKAIEQNEKITIYGDYDVDGLTSSAIMLETLQSLGADPDVFIPDRFTD
GYGPNAEVYAYLQKTGTQLVITVDNGVAGAAVIDPAQAAGMDVVVTDHHELPANLPHAVA
VVHPRHPDGDYPFGDLSGAGVAFKVATALLGEPPLESVDLAALGTIADLVSLTDENRVIA
QLGLKMIQTQPRVGLAAILKEAGVAPETVNETTVGFVIGPRLNALGRMGDANPGVTLLTT
FEDDVAAELAEQVGKLNQERQGLVAKIAQEALTMAQAPENQAAKTLLLASKGWHEGVVGI
VASKVVEATGKPTLIMNIADDGETAKGSGRSIEAYHLFKALEPAKEHMVHFGGHHMAVGL
TAKTTDLPAIHAQMEAAAATMLKTVPKPTLPIATRLEDADLTLDHYQLIRQLAPFGQGNP
EPVFSVRPQAIQNVKQIGKENNHLRFQIDQGINVIGFGYGDAAETLATAQTVKLAVQLDQ
NTWQGNTSLQLMLKDYEVKQPQVIDWRMPTIDGGQFKASRTYVFFDAKVKQQFERQFSFG
GPTTIAAQVQTPLANAVLVDLPKDAAALHQVMQYVQPPVAVMFYGAPSRLVAIPTRAEFG
AVLRFLKAHPGFDKHHIPAIAKAVHLTVHQVILAVQVFFELDFVTIEGAFISPVTAPAKK
PLQTAKAYAARAAFLDLAQQLQTMPRAQLETMLLTEHSDSEVES
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atgacgcagtatcaatggcaactcgccccacaacctgcagcagctgatgcacacgcgctt
agcgagacattgggtgtcccaccatttttagcgaccttgttgctgcaacgcgggattaat
gatcaggcagattatgatgcgttcgtgcacccagacactagtcgattgcatgatccattc
gccttgcatgacatggataaagccgttgcccggattttaaaggcaattgagcaaaatgaa
aaaatcacgatttatggcgattacgatgttgatgggttgaccagcagtgccatcatgctt
gagaccttgcaaagtctgggcgccgatccggatgtgtttattcctgatcgcttcaccgat
ggttatgggccgaatgccgaagtttatgcttatttgcaaaaaactggcacacagttggta
atcaccgttgataacggtgttgctggtgccgcagtcatcgatccggcacaggctgcaggc
atggatgtggtggtgaccgatcatcacgagttgccagcaaatttgccgcatgcggtggct
gttgttcatccacggcatccagatggcgattatccgttcggtgatctttctggggctggt
gttgcctttaaggttgcaacggccttattaggcgaaccaccgttagaaagcgttgacttg
gcagctttgggtaccattgctgatctggtcagcttaaccgatgaaaatcgtgtgattgcg
caattaggcttaaaaatgatccagactcagccgcgggttgggcttgcggctattttaaag
gaagctggtgttgccccggaaaccgtgaatgaaacaacggtcggttttgtcatcggaccg
cggttgaatgcacttgggcggatgggcgacgcgaatcctggcgtaacgttgctgacgaca
tttgaggatgacgtagcggctgagttggccgaacaagtcggcaagctaaatcaggaacga
caaggattagttgcaaagatcgctcaggaagccttgacgatggcacaggcaccggaaaac
caagcggccaaaacattattgctggccagtaaaggttggcatgaaggggttgtcgggatt
gtggccagcaaggttgtcgaagcaacaggcaagccaacgttaattatgaacattgcagat
gatggcgaaactgccaaaggctcaggtcgctcgatcgaggcttatcatcttttcaaagct
ttagagccagcaaaggaacacatggtccattttggcggccatcatatggcagtcggtctc
acagctaaaacaacggatttaccagcgattcatgcgcagatggaggcggctgcggcgaca
atgctgaaaactgttccgaaaccaacgttgcctatcgcaacgaggctggaagacgctgat
ttgacattggatcactatcaattgatccgtcagttggcaccgtttggtcaaggcaatccc
gaaccggttttctcagtacgcccgcaagctatccaaaatgtgaaacagattggtaaagaa
aacaatcacttgcgttttcaaatcgatcaaggcatcaatgtgatcggttttggctatggt
gatgctgctgaaacactggcaactgcacagaccgtgaaattggcggttcagctggatcag
aatacctggcaaggtaacactagtctgcagctcatgttgaaagactatgaagtcaaacaa
ccgcaagtcattgactggcggatgccaacgattgacggtggccagttcaaagccagtcgc
acttatgtgttctttgatgcgaaagtcaagcaacagtttgaacggcaattttcctttggt
gggccaacgaccatcgcggctcaagttcaaacgccgttagcgaatgcggttttagtcgac
ttgccaaaggatgctgccgcgttgcatcaggtgatgcagtatgtgcagccgcctgttgcc
gtcatgttttatggcgcaccaagccgcttggttgctataccgacgcgggcagaatttggg
gccgtgttgcgttttctgaaggcccatcctgggttcgacaagcatcacattccagcgatt
gctaaggcggtccatttaaccgtccatcaagtgatcttggcggttcaggtgttttttgaa
ctcgattttgttacaatagagggtgcttttatttctccagtcacagccccggcgaaaaag
ccgctgcaaacggcgaaagcttatgcagcgcgtgcagcctttctagatctggcgcaacag
ttacagaccatgccgcgcgctcagcttgaaaccatgttgctgacggagcattcagacagt
gaggtagaatcatga
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