Lacticaseibacillus casei 12A: LCA12A_1963
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Entry
LCA12A_1963 CDS
T03665
Name
(GenBank) tRNA pseudouridine synthase A
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
lcx
Lacticaseibacillus casei 12A
Brite
KEGG Orthology (KO) [BR:
lcx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lcx03016
]
LCA12A_1963
Enzymes [BR:
lcx01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
LCA12A_1963
Transfer RNA biogenesis [BR:
lcx03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
LCA12A_1963
Prokaryotic type
LCA12A_1963
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
DUF2344
Pus10_C
Motif
Other DBs
NCBI-ProteinID:
EKP96756
LinkDB
All DBs
Position
complement(2422609..2423352)
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AA seq
247 aa
AA seq
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MTHYKVTLAYDGTNFAGYQVQPKQRTVQGVLQKALTKMTKGQPVHVDGSGRTDSGVHALG
QVISFDYPGNIPAESMLKAMNSLMPLDIEILKAEIVDADFHARYSAKGKRYLYRVARGYY
TNPFNRLYTGHYPYKLDVQRIEVALKDLVGTHDFTSFAASGGVIVDKVRTIYEATVREDP
VTNEIIFEFYGNGFLYNMVRILVATALEIGNGRRDVHDFQRLFAVKDRQQARGTAPASGL
YLKEVYY
NT seq
744 nt
NT seq
+upstream
nt +downstream
nt
atgacgcattacaaggtaacactggcctatgatggcaccaactttgctggctatcaggtt
caaccaaaacagcgcacagtccaaggtgtgctgcaaaaagctttaaccaaaatgacgaag
gggcagccagtgcatgtcgatggttcaggccgaactgattctggtgttcacgctttaggt
caggtgatcagttttgattacccgggaaatattccggctgagtcgatgctgaaagcgatg
aattcgttgatgccattagacatcgaaattcttaaagctgaaatcgttgatgccgatttt
catgcccgctattccgctaaaggcaaacggtatttgtatcgagtggctcgtggttactat
acaaatccgtttaaccgcctatatactggtcattatccttacaaacttgatgtgcaacga
attgaagtggcattgaaggacctagtcggcacacacgactttacaagctttgcggccagt
ggcggcgtgattgtcgataaagttcggacgatttatgaggcaactgttcgagaagatcca
gtgacaaacgaaattatttttgaattctatggcaatggctttctttacaacatggttcgg
attctcgttgcgacagcgcttgaaattggtaatgggcggcgtgatgttcacgactttcag
cgtttgtttgcagtcaaagatcgtcaacaagcacgcggcaccgcaccagcatcagggctg
tacttgaaggaagtttattattag
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