Lacticaseibacillus casei 12A: LCA12A_1969
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Entry
LCA12A_1969 CDS
T03665
Name
(GenBank) DNA-directed RNA polymerase alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
lcx
Lacticaseibacillus casei 12A
Pathway
lcx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lcx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LCA12A_1969
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcx03021
]
LCA12A_1969
03400 DNA repair and recombination proteins [BR:
lcx03400
]
LCA12A_1969
Enzymes [BR:
lcx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LCA12A_1969
Transcription machinery [BR:
lcx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LCA12A_1969
DNA repair and recombination proteins [BR:
lcx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LCA12A_1969
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_5
SAM_EPH
Motif
Other DBs
NCBI-ProteinID:
EKP96762
LinkDB
All DBs
Position
complement(2427468..2428406)
Genome browser
AA seq
312 aa
AA seq
DB search
MIEFEKPNITKVDESTNYGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAISSIQIDGVL
HEFSTIDGVLEDVTQIILNIKKLALKMNTDEDKNIEIDVNGPAKVTAADIVADPDVEVLN
PEQYICTVADGGHFHVRMTVKKGRGYVAADQNKSDDMPIGVLPIDSIFTPISRVNYQVES
TRVGRRNDFDKLTLDVWTNGSISPREAISLAAKILTEHLDIFVNLTDEAKNAEIMVEKEE
THKEKMLEMTIEELDLSVRSYNCLKRAGINTVQELTNKTEADMMKVRNLGRKSLEEVKNK
LADLGLGLRKED
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaattcgaaaagccgaacattaccaaagttgacgaaagcaccaactatggcaag
tttgtggttgaaccgttggaacgcggctacggtactactttaggtaactcgttgcggcgg
atccttctttcttcattgcctggggcagctatcagcagcatccaaatcgacggggtacta
catgagttctccacgattgacggtgtgctggaagatgtgacccagatcattttgaatatc
aaaaaattggcgctcaaaatgaacactgatgaagacaagaacatcgaaattgatgtcaac
ggtccggctaaggtaactgctgctgatatcgtcgctgatcctgatgttgaggtcttaaat
cctgaacagtatatctgtactgttgcagatggcgggcacttccatgtacgtatgaccgtt
aaaaagggtcgcgggtatgtggcagctgaccaaaacaagtctgatgacatgccaatcggt
gttttgccgatcgactcgattttcaccccgatcagccgggttaactatcaagttgaaagc
acccgtgttggccgtcggaatgatttcgacaagttaacgctggatgtatggactaatggc
tcaatctcaccacgagaagccatcagcttagcagcgaagatcctgacagaacacttggac
atcttcgtcaatttgacggatgaagccaagaacgctgaaatcatggttgaaaaagaagag
actcacaaggaaaagatgcttgagatgactatcgaagagcttgacttgtccgttcgttct
tacaactgcttgaagcgtgctgggatcaacacagttcaggagttaaccaacaaaacagaa
gccgatatgatgaaagtacgtaatttaggtcgtaagtcacttgaagaagttaaaaacaag
ttggcagatctcggcttaggattgcgtaaagaagactaa
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