Lacticaseibacillus casei 12A: LCA12A_2152
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Entry
LCA12A_2152 CDS
T03665
Name
(GenBank) DNA polymerase III alpha subunit
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
lcx
Lacticaseibacillus casei 12A
Pathway
lcx03030
DNA replication
lcx03430
Mismatch repair
lcx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lcx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LCA12A_2152
03430 Mismatch repair
LCA12A_2152
03440 Homologous recombination
LCA12A_2152
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lcx03032
]
LCA12A_2152
03400 DNA repair and recombination proteins [BR:
lcx03400
]
LCA12A_2152
Enzymes [BR:
lcx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LCA12A_2152
DNA replication proteins [BR:
lcx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LCA12A_2152
DNA repair and recombination proteins [BR:
lcx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LCA12A_2152
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NII
HHH_6
tRNA_anti-codon
DNA_pol3_a_NI
HHH_3
DEDDh_C
RNase_H_2
Zn_ribbon_8
T2SSK
DUF655
YhfH
Motif
Other DBs
NCBI-ProteinID:
EKP99113
LinkDB
All DBs
Position
complement(1540775..1545109)
Genome browser
AA seq
1444 aa
AA seq
DB search
MALSQHEMFEKLLDQLDLAADVRQDPSLTSGTVQNVTIHEQSRRYDFTLGFDAILPFQIF
NAIATKLPLVFQQIAATDLSVEVTQPTITDELLAQYWQYVVTHAEIGTGIVRELCEKQVP
TLENDRAVIKTENEQIRQYLIQQGLGKLEETYRQVGFSGLRMQAEVDEEQAAQSMAAFQA
QRAEETAKMAKAAAEVVKQQAAKQKQVQTDGPVQMGRQMKMTDAPQQMVTITQEERSVTV
EGYVFDVEVRELRSKRQLLIFKVTDYSSSFIAKKFSNGPEDEAMFARIQKGQWLRVRGSV
QEDNYSRELTINAQDIQTVSHPDPTDDAEREKRVELHLHTNMSQMDAMNPISDYVKRAKE
WGHKAIAVTDHAGLQAYPEAHSAAVKAGLKMLYGVEINLVDDGTPVAYRADEPRDLASAE
YVVFDVETTGLSAVYDKVIELAAVKMKDGKVIDQFEEMIDPGFPLSELTINLTHITDDMV
HGSKSEVDVFKLFQQFCDGAIMVGHNVTFDVGFLDNGYERHGLADIDNPVIDTLELSRML
HPERKNHKLDTLAKQYKVSLEHHHRANADAEATGYLLYALEKEAAKMYGMTTLNQLNDRV
GAGDAYKAARPSHAIVFAKTQAGLKNLFKLVSLSNVKYFYRVPRVPRSQLQKLREGLLVG
SACSSGEVFTAMMQKGEAEARAKASFYDYLEVQPLPVYQPLIEAGLIKGEAHLKDIIQKV
IKIGSELEKPVVATGDAHYLDQHDAIYRQILIHSQGGANPLNRHSLPDVHFRSTSEMLTD
FSWLGEEKAHELVVDNSNLIANWVDDDITPVKDKLYTPEVPGVEENLKHDVMTTAHELYG
DPLPDIVAQRLDKELKSIIGNGFSVIYNIAQRLVLKSNKDGYLVGSRGSVGSSLAATMAG
ITEVNPLPPHYRCPNCQYSEFFTHGEIGSGFDLPDKQCPKCGADLHKDGHDIPFETFLGF
HGDKVPDIDLNFSGDYQPIAHNYIKVMFGEDHSFRAGTIGTVADKTAYGYVKAYERDTGQ
QLRGAEIDRLAQGDTGVKRTTGQHPAGILIVPADMDIYDFTPIQYPADDQNAAWMTTHFD
FHSIHDNILKMDVLGHDDPTMIRMLQDLSGVEPKSIPTDDPGVMALFSGTKSLGVTPEQI
NSKMGTLGIPEFGTRFVRGMLEETKPTTFSELLQISGLSHGTDVWLGNAEELIKQGIVTL
KEVIGCRDNIMMDLIHWGMEDSMAFNIMEHVRKGRGIPDDWQKAMRENENVPDWYIESCL
KIKYMFPKAHATAYILMALRIAWFKVHYPLIYYTAYFSVRAEDFDLAAMSHGKEAVKAAM
KEITDKGMDASTKEKQLLTVLEIANECLERGFKIKMIDVTKSDSHNFLIQDDHTILAPFR
AVPGLGDNVAKQIVAAREEKPFLSKEDLANRGKVSKTLIDYMTTNHVLDDLPDENQLSLF
DGLF
NT seq
4335 nt
NT seq
+upstream
nt +downstream
nt
ttggctttatcccaacatgagatgtttgaaaaattattggatcaactcgacttggcggca
gatgtccgacaagatccttcgttgaccagcggcacggtacaaaacgtgaccattcatgaa
caatctcggcgttatgatttcactttggggtttgacgcgatcctgccatttcagattttc
aatgcaattgcgaccaagttgccgttagtgtttcaacagattgctgcgactgatttatcg
gtggaggtaacccagccaaccattactgacgagttattagctcaatattggcagtacgtc
gtgacccatgccgaaattgggacaggaattgttcgcgagttatgtgaaaaacaagtgcca
acacttgagaatgatcgtgctgtgatcaaaaccgaaaatgagcaaattcggcaatacttg
attcagcaagggctcggtaagctcgaagaaacttatcgtcaggttggcttctctggctta
cggatgcaagccgaagttgatgaggaacaagcagcccaatcaatggcggcttttcaggct
caaagagctgaagaaaccgctaaaatggccaaggctgctgcagaagtagtgaagcagcaa
gcggctaaacaaaaacaagttcaaactgacggcccagttcaaatggggcggcagatgaaa
atgaccgatgccccgcaacaaatggtgaccatcacgcaagaggaacgttcagtgacggtt
gaaggctatgtttttgatgttgaggttcgggaactgcggtctaagcggcagttactaatt
ttcaaagtgactgattatagctccagcttcattgcaaaaaaattcagcaatggtccagaa
gatgaagccatgtttgcacggattcaaaaaggtcagtggctacgcgtgcgaggcagtgtt
caagaggacaactattcccgtgagctgacgattaatgcacaggatattcaaactgtctcc
catccggacccaaccgatgatgctgaacgtgagaaacgcgttgaattacatctgcacacc
aatatgagtcaaatggacgctatgaatccaattagcgactatgtgaagcgggctaaagag
tgggggcataaggcgattgctgtcactgaccatgcaggtttgcaggcttatccagaggca
cattcagccgctgtcaaagccggtttaaaaatgctttatggcgtcgagataaacttagtt
gatgatggcacgccggttgcttaccgagcagatgagccgcgtgatttagccagtgctgaa
tatgtggtttttgacgttgaaaccactggcttatcagcggtttacgacaaagtgattgaa
ttggctgccgtcaaaatgaaagacggcaaagtgattgatcaattcgaagaaatgatcgat
ccgggtttcccactttctgaactgacaattaatttgacacatatcactgatgacatggtg
catggatcaaagtctgaagtcgacgttttcaaattgtttcagcagttttgcgatggtgcc
attatggtgggtcataatgtgactttcgatgttggctttttggataatggttacgagcgg
catggattggcagacattgacaatccggtcatcgatactttggaattgtcgcggatgctg
catccagaacggaagaatcacaaactcgataccttggcgaagcagtacaaagtcagccta
gaacatcatcatcgcgctaatgccgatgccgaggcaactggttatctgctttatgctttg
gaaaaagaagcggccaagatgtatggcatgacgaccctcaatcagttgaacgatcgggtt
ggggcgggggatgcctataaagctgcacggccaagtcacgcgattgtttttgcgaaaaca
caagcgggattgaaaaaccttttcaaattagtatcgttgtctaatgttaagtacttctat
cgggtcccacgggtgccacgcagtcagctgcagaaactgcgtgaaggcttgttagtcggt
tcggcttgttccagcggcgaagttttcacagcaatgatgcaaaaaggcgaagcggaggcc
cgcgccaaagcgtcattctatgattatctagaagtgcaaccattacctgtctatcaacct
ttgatcgaggctggtttgatcaaaggcgaggcacatctaaaagatattattcaaaaagtc
atcaaaatcggatcggaactggaaaaaccagtcgtagcgacaggcgacgcccattatttg
gatcaacatgacgcgatttatcgacagattctgattcatagtcaaggcggagccaatcca
ctcaatcgccacagtttgccagatgtgcattttcgttcgacaagtgagatgctgaccgat
tttagttggcttggggaagagaaggcccacgagctggtagttgataattctaacttgatt
gccaactgggttgacgatgatattacgccggtgaaggataagctttacacacctgaagta
cctggggtggaagaaaatctgaaacatgacgtgatgaccacggcgcatgaattgtatggc
gatcctttaccagacattgtggcgcagcgactcgataaagaactaaaaagtatcatcggt
aacgggttctctgttatttacaacatcgcgcaacggctggttttgaagtccaataaagac
ggatacttggttggctctcgaggatcagttgggtccagtttagccgcaacgatggccggc
attactgaggttaatcctctgccgccgcattatcgttgtcctaactgtcaatacagcgaa
ttcttcactcatggcgaaatcgggtccggttttgatttgccagataaacaatgccctaaa
tgcggcgctgatttgcataaagatggccacgatattccgtttgaaactttcttaggcttc
cacggtgataaagtgccggatattgatctgaatttctcgggtgactatcagccaattgca
cataactatatcaaagtcatgttcggtgaggatcatagtttccgtgctgggaccattggc
acggttgcagacaaaacggcgtatggttatgttaaagcgtatgaacgtgacacgggacag
caactgcgcggtgccgagattgatcggctggcgcaaggtgacacgggggttaaacgtacc
actgggcaacacccggcaggtattttgatcgtgcccgctgacatggatatttatgatttc
acaccgattcagtacccagctgatgatcaaaatgctgcctggatgaccacgcactttgat
ttccattccatccatgacaatattttgaaaatggacgtgctggggcatgatgacccgacg
atgatccggatgctgcaagatttgtccggggttgagccaaaatcaattccaacggacgat
cctggcgtcatggcgcttttttccggcaccaagagtctgggtgtcacgccggaacagatt
aactcgaaaatggggacgttaggcattccggaatttgggacgcgttttgttcgcggaatg
cttgaggaaaccaagccaaccactttcagcgaactgttacagatttccggtttgtctcac
gggaccgatgtttggttaggtaacgctgaagaactgattaagcaaggcattgtcacgctt
aaagaagtcattggttgtcgtgacaacattatgatggacttgattcactggggcatggaa
gattcaatggcctttaacatcatggaacatgtgcgtaaaggtcgcggtattccagatgat
tggcaaaaggcaatgcgtgaaaacgagaacgtgcctgattggtatatcgagtcctgctta
aagatcaagtacatgtttccgaaagcacatgcgaccgcctatatcttaatggcgttacga
attgcttggttcaaggtccattacccgttgatctattacacggcatatttctcggttcga
gctgaagactttgatcttgccgccatgagtcatggcaaggaagcggtcaaagcggccatg
aaggagattaccgataaaggcatggatgcctctaccaaggaaaagcagttgttgacggtt
ttggaaatcgccaatgaatgtctcgaacgcggttttaagattaaaatgattgatgtcacg
aagtcggattcgcacaatttcttgattcaggatgatcacacgattctggcaccattccgt
gctgttccgggcctgggcgataacgttgccaagcaaatcgtggccgctcgtgaagaaaaa
ccattcctgtccaaggaagatctggctaatcgtggtaaggtttcgaaaacgttgattgat
tatatgacaacaaaccatgtcttggatgacttgccagatgaaaaccaattatcgctattt
gacggtttattctag
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