Lacticaseibacillus casei 12A: LCA12A_2370
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Entry
LCA12A_2370 CDS
T03665
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lcx
Lacticaseibacillus casei 12A
Pathway
lcx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LCA12A_2370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcx03019
]
LCA12A_2370
03400 DNA repair and recombination proteins [BR:
lcx03400
]
LCA12A_2370
Enzymes [BR:
lcx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LCA12A_2370
Messenger RNA biogenesis [BR:
lcx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LCA12A_2370
DNA repair and recombination proteins [BR:
lcx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LCA12A_2370
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HHH
TadB_TadC_N
Motif
Other DBs
NCBI-ProteinID:
EKQ00413
LinkDB
All DBs
Position
1022785..1024563
Genome browser
AA seq
592 aa
AA seq
DB search
MIAPQAETILKEKFGYDHFRAGQNQAISRVLAGESTLVVMPTGGGKSLCYQIPAMLLSGL
TLVVSPLIALMKDQVDALNDNGIPAAFINSILDYQEIADRLDQARSGRIKLLYVAPERFD
TDWFVQRLGSTDISLFAIDEAHCISQWGHDFRPSYLNLANVAAQLPSQPPVIALTATATP
RVAQDICQRLAIPADGMINTGFERSNLSFKVVRDQDEDRYLLDYLKLNVDQAGIIYASTR
KEVDRLYTFLAHKKLPVAKYHAGMSEAQRAANQEDFLFDRKPIMIATNAFGMGIDKSNVR
FVIHAQIPKDVESYYQEAGRAGRDGLPSEAILLFKPQDLQVQRFFIDQSEGDDEHKQRQY
EKLKMMERYANTDQCLQQFILNYFGQNGTKPCGRCSNCLDDRESVDVTVDAQKVLSCVVR
LHERFGKGVVAQVLAGAHNQRVLSFHLDQLSTYGLMSSRRQRDITTFIDFLAAGGYLETR
GGQYPTLGLTAKGAEVLRGQAQVFQKTAQKAEQHLEVDDTVFQELRSTRRQLAEQQHLPP
YMIFSDKTLKAIGSAMPQSLDELMAVKGVGQAKLDKYGQIFLDVLQAIKAKA
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgattgcgccgcaagcggagacaattttaaaggaaaaatttggctatgatcattttcgt
gctggtcaaaatcaggccatcagtcgcgttttggctggtgaaagcacgctggttgtgatg
ccaacaggcggcgggaaatcgttgtgttatcagattccagcgatgttgttgtcgggattg
acgctcgttgtgtcgccgctcatcgcgttgatgaaggatcaggtggatgcgttgaacgat
aacgggatcccggcggctttcattaatagtatccttgattatcaagagattgctgatcgt
cttgaccaagcaagaagtggtcggattaaattgttatatgttgccccagaacggtttgac
acggattggtttgtgcaacggcttggcagcaccgatatttcgttatttgcaattgatgaa
gcccattgtatttctcaatggggtcacgattttcggccgagttatttgaatctggcgaat
gtggcggctcaattgccttcgcagccaccggtcattgccttgaccgcaacagctacaccg
cgagttgcgcaggatatttgccagcgactggcgattccggctgacgggatgattaatact
ggttttgagcgaagtaatctgagcttcaaggtcgtacgcgatcaggatgaagatcggtat
ctactagattacctgaaactgaatgtcgatcaggcaggcatcatctatgccagcacccgt
aaagaagttgaccgtttgtatacctttttggcacataagaagttgcctgtggccaaatat
cacgcgggcatgagtgaagcgcagcgtgctgctaatcaggaagactttttgtttgatcgc
aaaccaattatgattgcaacgaatgcgttcggcatgggtattgataaaagcaacgtgcgg
tttgtcattcacgcccagattcccaaagatgtcgaatcgtattatcaagaagccggtcgg
gctggtcgtgatggcttgccgagtgaggcaattttgctgtttaagccgcaagatctccag
gttcagcggttcttcatcgatcaatccgaaggcgatgacgagcacaaacagcggcaatat
gagaagttgaaaatgatggaacggtatgcgaacacagatcagtgtttgcaacagtttatt
ttgaactatttcggtcaaaacgggacaaaaccatgtggtcggtgttcgaattgtttggat
gaccgggaatcagtggatgttacggttgatgcacagaaggtcttatcttgtgtggttcga
ttgcatgaacgttttggcaaaggcgttgtggcacaagtgttggctggggcccacaatcag
cgggtattgtcgtttcatctagatcaattgtcaacttatgggttgatgagcagtcgtcgt
caacgcgacattacaacgttcatagattttctggcggctggcggttatttagaaacccgc
ggtggtcagtacccaactctgggcttaacggccaaaggcgctgaggttcttcgcggacaa
gcgcaagtattccagaaaacggcgcaaaaagccgagcagcatctcgaagtcgacgacact
gtctttcaggaactgcgcagtactcggcgacaactggcggagcagcagcatttaccgcct
tatatgattttctctgataagacgttgaaggcaattggcagcgccatgccgcaaagtctt
gatgagttgatggcagtcaaaggcgtcgggcaggcgaagttggataagtatggccaaatc
tttttggatgtcctgcaggcgattaaggccaaggcttga
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