Loigolactobacillus coryniformis subsp. torquens: LC20004_02700
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Entry
LC20004_02700 CDS
T05341
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lcy
Loigolactobacillus coryniformis subsp. torquens
Pathway
lcy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LC20004_02700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcy03019
]
LC20004_02700
03009 Ribosome biogenesis [BR:
lcy03009
]
LC20004_02700
Enzymes [BR:
lcy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LC20004_02700
Messenger RNA biogenesis [BR:
lcy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LC20004_02700
Ribosome biogenesis [BR:
lcy03009
]
Prokaryotic type
rRNA helicases
LC20004_02700
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
AAA_22
GRP
DUF4404
Motif
Other DBs
NCBI-ProteinID:
ATO42895
UniProt:
A0A2D1KL61
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All DBs
Position
583226..584773
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AA seq
515 aa
AA seq
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MKFTDLGLDPELLKAVRRQGFEEATPIQAETIPLAVTGVDVIGQAQTGTGKTAAFGLAIL
QKIDLENPNVQALIISPTRELAVQTQEELYRLGQDKKVKVQAVYGGADIGRQIRSLKDHP
QIIVGTPGRLQDHINRRTIRLDHVQVLVLDEADEMLDMGFLEDIEKIVQQVPDTRQTLLF
SATIPAAIRKIADRFMHDPKMVQIKAKELTADLLDQYFVQTKEFEKFDVMTRLFDVQQPE
LTIVFGRTKRRVDELSKGLRARGYNAEGIHGDLSQQKRMSVLRSFKAGRLDILVATDVAA
RGLDISGVTHVYNYDVPQDPDSYVHRVGRTARAGHKGTSITFVTPNEMGYLRTIEKLTRL
KMQPLKAPTAKEALQGQLSSAIESIQELIDNKDLSNYEAQGEKLLDSYTPLQLAAALLKA
TSKDDASEVPVKITPERPLPRRSAGGRGGNGRRSGGYRGGHRNDRDRRGGNGGGSRNGGH
GRSRDSHEGGGRYDRKKRFDKKDGGKRNYTIHTHA
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttacagatttaggtttagatccagagctattaaaagcagtacgccgtcaaggc
ttcgaggaagcaaccccaattcaggcggaaactattccgttggccgtaactggcgtcgac
gttatcggccaagcccaaactggtaccggtaagactgctgcttttggcttagcaattcta
caaaaaatcgatcttgaaaatcctaatgtacaagcattaattatttcaccaactcgtgaa
ttagctgtacaaacacaagaagaactttatcgcttaggccaagacaaaaaagtcaaggtt
caagctgtttacggtggtgctgatattggccgccaaattcgttcgctaaaagatcatcca
caaattatcgttggtactcctggtcgtttacaagatcatatcaaccggcggacgattcgt
ttggaccacgttcaagtattggttttagacgaagctgatgaaatgttggatatgggtttc
ttggaagatattgaaaagatcgtccaacaagtccctgatactcggcagacgttattattc
tccgcaacgattccggcagcaattcgtaaaattgctgatcgtttcatgcacgatcccaaa
atggttcaaattaaagccaaggaattaacggctgatttattggatcaatactttgttcaa
actaaggaatttgaaaagtttgacgtcatgactcgtttgtttgatgttcaacagcctgaa
ttgacgatcgttttcggtcggactaagcgtcgggttgacgaattatctaaaggcttacgt
gcccgtggctataacgccgaaggtatccacggtgatctatcccagcaaaaacggatgagc
gttctacgttcatttaaggctggccgtttagacatcttggttgcgactgacgttgccgct
cgtggcctggatatttctggggtcactcacgtatacaactatgatgtcccacaagatcct
gatagttatgttcatcgtgttggccgtacggctcgcgcagggcataagggaacttcaatc
acattcgtaacacctaatgaaatgggctacttgcggacgattgaaaaactaacacgcctg
aagatgcaaccattgaaggcaccgacagctaaagaagcgcttcaaggtcaattgtcttca
gcaatcgaatcaattcaagaattgatcgataacaaagacttaagcaactatgaagcacaa
ggtgaaaaattgttagatagctatacgccattgcaattggcagccgctttgctgaaagca
accagcaaagatgatgcttctgaagtgccagttaagatcacgccagaacggccattacca
cgtcgtagtgctggtggtcgtggcggtaacggtcgtcgtagtggcggctatcgtggcggt
catcgtaatgatcgtgatcgtcgtggcggtaacggtggtggcagtcgtaatggcggccat
ggtcgttcacgcgacagtcacgaaggcggcggtcgttatgatcgtaaaaagcgttttgat
aaaaaagatggcggcaagcgtaactataccattcatacgcacgcttaa
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