Loigolactobacillus coryniformis subsp. torquens: LC20004_03255
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Entry
LC20004_03255 CDS
T05341
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lcy
Loigolactobacillus coryniformis subsp. torquens
Pathway
lcy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lcy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LC20004_03255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcy03021
]
LC20004_03255
03400 DNA repair and recombination proteins [BR:
lcy03400
]
LC20004_03255
Enzymes [BR:
lcy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LC20004_03255
Transcription machinery [BR:
lcy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LC20004_03255
DNA repair and recombination proteins [BR:
lcy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LC20004_03255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ATO42979
UniProt:
A0A2D1KLH4
LinkDB
All DBs
Position
694179..697769
Genome browser
AA seq
1196 aa
AA seq
DB search
MAGHLVKYGKHRTRRSYSRIKEVLDLPNLIEIQSNSYNWFLDEGLKEMFNDIMPIDDFAG
NLSLEFVDYELLEPKYTVEEARQHDANYSAPLHVTLRLTNHETGEIKSQNVFFGDFPLMT
DQGTFIINGAERVIVSQLVRSPGVYYNSEVDKNGRTIYGTTVIPNRGAWLELETDAKDIS
YVRIDRTRKIPMSELIRALGFGSDDDIIGMLGNNESLMLTMEKDVHKNADDSRVEEALKD
IYERLRPGEPKTADSSRSLLNARFFDPKRYDLAAVGRYKINKKLSLKTRLLNQTLAETLA
DPDTGEVIAQKGDVVDRQVMEKLSPYLDREDFMTTTYTPSDEGAVTDPMTLQTIKVESKR
NPETVVPIIGNGHIELSWKHIRPADIIASMNYFLNLQEGIGSTDDIDHLGNRRIRSVGEL
LQNQFRIGLSRMERVVRERMSIQDTSTVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN
PLGELTHKRRLSALGPGGLTRDRASYEVRDVHYTHYGRMCPIETPEGPNIGLINSLASYA
VVNKYGFIETPYRRVDWNTHKVTDKIDYLTADEEDNYVVAQANSLLNEDGSFVDDTVLAR
REEDNLEISVDRVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPHA
PLVGTGMEYKAAHDSGTAVVAKNAGTVEYVDAKQVRVRREDGSLDKYDLMKYRRSNSGKS
YNQRPIVKLGDHIDVSEILADGPAMENGELALGQNPIIAFMTWNMYNYEDAIVLSEKLVR
EDAYTSIHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEFGIVRIGAEVKDGDLLV
GKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIQDVKIFTREAGDELSP
GVNMMVRVYIAQKRKIQVGDKMAGRHGNKGTVSIVVPEEDMPFLPDGTPVDICLSPMGVP
SRMNIGQVIELHLGMAARNLGIHVATPVFDGAQDQDIWAAVKEAGMDDDAKSVLYDGRTG
EPFANRVSVGVMYYMKLAHMVDDKMHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL
EAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVLVKELQSLGLDMK
VLDADKQEIELRDMDDEDDEVVSVDALSKFAKEQEAQKAKKAAEEAANASGDSDNK
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggccatttagttaaatacggtaaacaccgcactcgtcgtagttattcacgaatt
aaagaagtgttagatctccctaacttgatcgagatccaaagtaattcgtataactggttc
ttggacgaaggcttgaaagaaatgttcaacgatatcatgccaattgatgatttcgctggc
aatctgtccttagaatttgttgattatgaattattagaacctaagtatacggtggaggaa
gcacggcaacatgatgccaactactctgcaccattacacgttacgttacgtttaactaac
catgaaactggcgaaattaaatcacagaacgttttctttggtgattttccgttaatgacc
gaccaaggtacctttattatcaatggtgctgaacgggttatcgtttcccagttagttcgt
tcaccaggggtttattacaacagtgaagtggataaaaatggtcgtacaatttatggtaca
accgttatccctaaccgtggtgcttggttagaattagaaactgatgctaaggatatttcc
tatgttcgaatcgaccggacacgtaagattcctatgtctgaattgatccgtgctttaggc
tttggttccgatgacgatattatcggcatgttaggtaataacgaaagcttaatgttaacg
atggaaaaagacgtccataagaatgcggacgattcgcgtgttgaagaagccttaaaagat
atctacgaacgactacgcccaggtgaaccaaaaactgccgatagctcacgtagtttattg
aatgcgcgcttcttcgatccgaaacgttatgatttagcagcggttggtcgttacaagatc
aacaaaaagttatccttaaaaacacgcttgttgaaccaaactttggcggaaacattagct
gatccagatactggtgaagttattgcccaaaagggtgatgtagttgatcgtcaagtaatg
gaaaaattaagcccatacttggaccgtgaagactttatgaccaccacttacacaccatct
gatgaaggtgcagttacagatccaatgacgctacaaacaatcaaggttgaatcaaaacgc
aatcctgaaacagttgtaccgatcattggtaatggtcatattgaattaagctggaaacac
attcgtcctgccgatattattgcttcaatgaactacttcttgaacttacaagaaggtatt
ggttcaactgatgatatcgaccatttaggtaaccgtcgtattcgctcagttggtgaatta
ttacaaaatcaattccgaatcggtttatcacggatggaacgtgtggttcgtgaacggatg
tcaattcaagacactagcacagttacaccacaacagttgatcaatattcggccagttgtc
gcttcaatcaaagaattctttggttcttcacaattgtcccagtttatggatcaaacgaat
ccattaggtgaattaacgcataagcgtcgtctatcagccttaggccctggtggtttaact
cgtgaccgtgccagttatgaagtccgggatgtgcactacacccattatggtcgtatgtgt
ccaatcgaaacacctgaaggtcctaacattggtttgatcaatagtttggctagttacgcc
gttgttaacaagtatggttttattgaaacaccatatcgccgtgtcgactggaatacacat
aaagttactgataagatcgactatttaactgccgatgaagaagataactatgttgttgcc
caggcaaactcgttgctaaacgaagacggctcatttgttgatgacaccgtattggctcgt
cgtgaagaagataacttggaaatttccgtggatcgtgtcgattacatggacgtttcgcct
aaacaggttgttgctgtcgctactgcctgcattcctttcttggaaaacgatgattctaac
cgtgccttgatgggtgctaacatgcaacgtcaggccgttcctttgatcaatccacatgca
ccattagttgggactggtatggaatataaagccgcccatgactctgggactgctgttgtt
gctaagaacgctggtacagttgaatatgttgatgctaaacaagttcgtgttcggcgtgaa
gatggttcattagataaatatgatttaatgaaatatcgtcgttcaaactcaggtaagagt
tataaccaacgtccaatcgttaaacttggcgatcatattgacgttagcgaaatcttagct
gatggtccagccatggaaaatggggaacttgccttaggtcagaacccaattattgccttc
atgacttggaatatgtacaactatgaagatgcaatcgtcttatccgaaaaattagttcgc
gaagatgcttatacgtcgatccatattgaagaatatgaatcagaagcacgtgatactaaa
ttaggacctgaagaaattacccgtgaaattcctaacgtcggtgaagatgcgttgaaagac
cttgatgaattcgggatcgtccgcattggtgctgaagttaaggatggcgatttgttagtc
ggtaaggtgacacctaaaggggttacggaactttctgcagaagaacggttattgcatgca
atcttcggtgaaaaagcgcgtgaagtccgtgatacgtcactccgtgtacctcatggtggc
ggtgggattatccaagacgttaagatctttacccgtgaagctggtgatgaattatcacct
ggtgttaatatgatggttcgtgtttatatcgcccagaaacgtaagatccaagtcggcgat
aaaatggccggccgtcatggtaacaaagggacggtttcaatcgttgtccctgaagaggat
atgccattcttaccagatggtacgccagttgatatctgcttgagcccaatgggtgtgcct
tcccgtatgaacatcggtcaggtgatcgaattgcatttagggatggccgcacgtaattta
ggtattcatgtagcaacacctgtctttgatggtgcacaggatcaagatatctgggcagcc
gttaaggaagccggcatggatgacgatgcgaagtcagttctttatgatggccgcaccggt
gaaccatttgctaaccgtgtttctgtcggggttatgtactacatgaagttagcccacatg
gttgatgataagatgcatgctcgttcgatcggaccttactcattagttacgcaacaacca
ttaggtggtaaagcccaatttggtggtcagcgtttcggtgaaatggaagtttgggccctt
gaagcttacggtgcagcttataccttacaagaaatcttgacttacaagtctgatgacgtg
gttggtcgtgtcaagacctacgaagccattgtcaaaggtgaaccaattccaaaaccaggt
gttccggaatcattccgtgtcttggtcaaagaattacaatcacttggtctagatatgaaa
gtcttagatgctgacaagcaagaaattgaattacgcgacatggacgatgaagacgatgaa
gtcgttagcgtcgatgctttgagcaagtttgccaaagagcaagaagcacaaaaggcaaag
aaggctgcagaagaagcagctaatgctagcggcgacagcgacaacaaatag
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